Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2602 ATGTCGTCGACGCTTCTGGAAGTGACACGTGCCTCGCACGAGGAAGTGGAACGGTTGGAAAGGGTGATAGTGAAGGACCTTCAGAATGAGCCAACTTCCAATAAAGACCGCTTGTTTCAGAGCCACCGCGTTCGGAACATGATTGACACCATTACTTCCACCACACACAAGCTTATTGAGATATATGAGGATAATGACAATGCCAGGAAGGACGAGATTGCTGCACTCGGAGGTCAAACTGCTACTGGAGTCAACAATGTATTTAGTGCGTTCTATGATCGTCTGAAAGAGATACGAGAGTATCACAGGAAGCACCCAGTTGCCCGGGTTGTTGATGCTAATGATGATTATGAAGCACTCCTTAAAGAAGAACCTCAAATTGAGTTTAGTGGAGAGGAAGCTTTTGGCCGATACTTAGATATGCATGAGCTGTACCATCAATATATCAATTCAAAATTTGGAGAGCCAATTGAGTATTCTGCGTATCTTGATATTTTCCCAGAGGCAGACAAGATTCCACGCAAGAAGAAAATGACCAGGCAGTACAGAGAATATATGGAGAATCTTTTAGAGTATCTTTTGTATTTTTTCCAGCGGACAGAACCCCTGCAAGATGTTGATCGAATTTTCTCGAAGGTAACAACTGAGTTTGAAGAAAATTGGGCTGCTGGAAAGGTACACGGATGGGAGAATGAAAATCAGGAGAATGGACACGCACCTGCTCAGCATGCTGCACTTGATCTTGATTATTACAGTACAGTTGAAGAGCTGATGGAAGTGGGTCCTGAAAGGTTAAAGGAGGCACTTGCAGCATTAGGACTTAAGACTGGTGGTACCATTCAGCAACGTGCAGAGAGACTCTTCCTCACAAAGCACACACCTCTTGAAAAACTGGACAAGAAGCATTTTGCTAAGGGAGCACGTGCTTCAGAGAAAAAAGGGGTTGCTCCAGTTCCACAAGAAGATGCAAATTCAAAAGAAATTGCATTAATGGAGGCCAAAATGAAGAAGCTGTGTGATTTGTTAGAAGACACTATTGACCGAACAAAAGACAATGTTGTAAAGAAGCAAGCGCTGACGTATGAAGAAATTGAAGCAGAACGTGAGGAGGAAGAGACACAAGAGGACACTGAAAGTGAAGATGAGGAGCAGCAGATATATAATCCCCTAAAGTTGCCAATGGGATGGGATGGGAAGCCCATACCTTACTGGTTGTATAAGTTGCATGGTCTTGGTCAGGAATTTAAGTGTGAGATATGTGGGAACTACAGTTACTGGGGGCGTCGGGCTTTTGAACGGCATTTTAAAGAGTGGCGCCATCAGCATGGCATGCGATGCCTTGGTATACCAAATACCAAAAATTTCAATGAGATCACATCAATTGAGGAAGCAAAGGAACTTTGGAAGAAGATACAGCAAAGACAAGGAGTGAACAAGTGGCGCCCAGATTTGGAAGAAGAGTACGAAGACAAGGAAGGGAACATCTATAATAAGAAGACGTACACTGATTTACAGCGCCAGGGACTCATATGA 1533 0.4364 MSSTLLEVTRASHEEVERLERVIVKDLQNEPTSNKDRLFQSHRVRNMIDTITSTTHKLIEIYEDNDNARKDEIAALGGQTATGVNNVFSAFYDRLKEIREYHRKHPVARVVDANDDYEALLKEEPQIEFSGEEAFGRYLDMHELYHQYINSKFGEPIEYSAYLDIFPEADKIPRKKKMTRQYREYMENLLEYLLYFFQRTEPLQDVDRIFSKVTTEFEENWAAGKVHGWENENQENGHAPAQHAALDLDYYSTVEELMEVGPERLKEALAALGLKTGGTIQQRAERLFLTKHTPLEKLDKKHFAKGARASEKKGVAPVPQEDANSKEIALMEAKMKKLCDLLEDTIDRTKDNVVKKQALTYEEIEAEREEEETQEDTESEDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2602 510 Coils Coil 354 381 - -
Ahy17g2602 510 MobiDBLite consensus disorder prediction 364 383 - -
Ahy17g2602 510 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 128 177 IPR031774 -
Ahy17g2602 510 PANTHER SPLICING FACTOR SF3A-RELATED 1 510 - -
Ahy17g2602 510 ProSiteProfiles Zinc finger matrin-type profile. 415 446 IPR000690 GO:0003676|GO:0005634|GO:0008270
Ahy17g2602 510 Pfam Splicing factor SF3a60 binding domain 85 106 IPR021966 -
Ahy17g2602 510 MobiDBLite consensus disorder prediction 362 384 - -
Ahy17g2602 510 Pfam Replication stress response SDE2 C-terminal 224 305 - -
Ahy17g2602 510 Pfam SF3a60/Prp9 C-terminal 391 510 IPR024598 GO:0000398|GO:0003723|GO:0005681
Ahy17g2602 510 PANTHER BNAA03G01920D PROTEIN 1 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2602 Ahy-Chr17 122449105 122453865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2602 1 510 C2H2 Transcription Factor Family AT5G06160 74.902 0.0 758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2602 K12827 - gmx:100815393 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2602 17 122449105 122453865 Ahy17g2602 17 122449105 122453865 ECH
Ahy17g2602 17 122449105 122453865 Ahy8g0381 8 7903655 7908412 hybridization