Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2570 ATGGAGTTCTTTAATAACGAACTCGATTCTTTCTCTAACGACATCGACAAAATAATGGAGATTTCACCTATGGATGATTTCGACGATTGGGCGCCATTGTTAACCTACAAAAGCACGCAGAAGCTTTTCCTGAACGACTTGCCAGAAGTGGATAACGACTTTGACGACCTTCCACCTCTGGACGATTTCAAGAAAGAGCGCGAGGAAGAGGATCAAGAACACAAGCAGTTACTACAACTTGCTCCGATTAGTACGATTAAGAACAAGAAGAGTGAGTTGGAATACGATGAGATCAAGAAGCACTTCGATTTGCCAATCACAGAAGCTGCTAGCAAGATGAACATTGGTTTGACATTGTTGAAGAGAAGGTGCAGAGAACTCAGCATCAAGCGTTGGCCTCATAGGAAAATCAAGAGCTTGCATTTACTCATACAAACTCTCAAGGAGATAGGTTTGGACAATGAAGTTGAAATGTTGGAGCAAGAAATAAACATGTTGAAGCAAGTTCCAGGGACGGAAATCACACAAGAGACCAAGAAACTAAGGCAGGCTTATTTTAAAGCCAATTACAAAAGGAGGAAACTTTTGGCCTCTAACTGTTCTTCATCATCATCATCATCATCACTTAGCTAA 633 0.4107 MEFFNNELDSFSNDIDKIMEISPMDDFDDWAPLLTYKSTQKLFLNDLPEVDNDFDDLPPLDDFKKEREEEDQEHKQLLQLAPISTIKNKKSELEYDEIKKHFDLPITEAASKMNIGLTLLKRRCRELSIKRWPHRKIKSLHLLIQTLKEIGLDNEVEMLEQEINMLKQVPGTEITQETKKLRQAYFKANYKRRKLLASNCSSSSSSSSLS* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2570 210 Coils Coil 60 80 - -
Ahy17g2570 210 Coils Coil 149 169 - -
Ahy17g2570 210 ProSiteProfiles RWP-RK domain profile. 81 162 IPR003035 -
Ahy17g2570 210 PANTHER PROTEIN RKD4 64 208 IPR044607 GO:0003700
Ahy17g2570 210 Pfam RWP-RK domain 93 140 IPR003035 -
Ahy17g2570 210 PANTHER PROTEIN RKD1-RELATED 64 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2570 Ahy-Chr17 121345016 121346248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2570 93 197 AtRKD Transcription Factor Family AT5G53040 58.095 4.77e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Ahy17g2570 RWP-RK 6.30E-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2570 - - aip:107605887 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2570 17 121345016 121346248 Ahy17g2570 17 121345016 121346248 ECH
Ahy17g2570 17 121345016 121346248 Ahy8g0359 8 7384214 7385277 hybridization