Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2558 ATGGGTAGCTTTAGCGAATTCGAAGAATGTCGGTTTTTTGATGCTCAAGAAGATGTTGTGTCCATTGCAGATTCAGTATCTGATGGAACTGACACCCTTGACATCAAATCTACTTCCAATGGAAGAATAGGATTGGAGGGCTTTGACTATGATGTGTGGATTCGGAGCCCAAGGAGTGTTCGAGAGCGTAGGGGCAAGTTTATGAAGAAGATGGGACTGAGTGTGAATGGGATTGAGAATTCAGTGGATGTGGTCGGTGTTGTTGAGCAGGAAGAGGTGAGGGATAGAGTGGAGTATAGTAGTGGGGCTGTGACTAGAACTTGTGATGGTTTTGAAGAGGAGTTCTGTTCGAGTCGGTCATCTATGTCTTGTTTTTCCGGTATTGATTCTTCAAAGGAGTTTGGTTTGGAGGAGAACTTGCTGTGCCAAGACAAGAATTCAGACAAGAGAGTTGAGTGTAATGTGGATCCAAAGGGGGAACAGAGGAATATGAGGGATGGTAGGGATGTGGTTCTGGATCGGTTGGCGAATACAGGGGAACCTGATGATTCTGAGAAACCCTCTGGGGTAACTCCTTCTTGGCAGACGAATGGGAATAAAAGGAGTTGGCTCAGAAGATTGCGGTCATTTACATGTATGCTTGATAATCAAGGTGATAATGGTTTTGGCTCAGGATGTAGGCTTCAGAGAGTTAAGGTTCGACAATGCAAGAAGCAAATGAAGGAATTATCTGCTCTTTACATGAGACAAGATATCAAAGCGCATGAAGGTTCTATTACGACAATGAAATTCAGTCCTGATGGCCAGTATCTTGCAAGTGGCAGTGAAGATGGAGTTGTGCGCTTGTGGCAAGTGATTGAGGAGGATATGTCTAATGAAATTGACATTTCAGAAATTGACCCATCCTCCCTTTACTTTACAGTGAATAATCTCTCTGAATTGAAACCTCTGTTTATGGACAAGGAGAAAATCAACAAACTGAAGAGCATGAGAAAAACACAAGATTCAGCATGTATCATTTTCCCTCCTAAGATCTTCAGGTTGTTGGAGAAACCATTGCACAAGTTCTATGGGCATAGAGGTGAAGTATTGGATCTCTCCTGGTCAAAGAATAATTATCTTCTCTCATCATCCGTTGACAAAACTGTCCGTCTGTGGCAAGTGAAATCCAATAATTGCTTGAAAGTTTTCCCACACAGTAATTATGTGACATGCGTACAATTCAATCCCGTAGATGATAATTATTTCATTAGTGGATCTATAGATGGAAAAGTGCGCATCTGGACGATTCCTGATTGTCGTGTCATAGATTGGACTGACATTAGAGATATAGTAACGGCAGTATGTTATCGACCCGATGGCCAGGGAGGGATTATTGGGTCCATGGCAGGAAATTGTCGATTTTATAATGTATCAGATAATCAGTTGCAGTTGGATTCCCAACTATGTTTACTTGCTAAAAAGAAATTTACTGGAAGAGGGATAACAGGCTTTCAGTTTTTTCCACAAGATTGTAACAAAGTTATGGTTACCTGTGCGGATTCACAAGTCAGAATCCTTGACGGGCTTAATGTGATTGGCAAATACAAGAGCGTAGGCACAGGGAGCCCAATGAGTGCATCTTTCACTTCTGATGGCAAACATATATTATCAGCATCCGAGGATTCTAATGTATATATGTGGAATGTTAGTCAGGAAGAGTCTATTCCCATGAAAGCTAAGAAGATTTGGTCTTCTGAGCGGTTTTTCTCAAACGCTTCCATTGCAGTGCCTTGGCAAGGTTTGAAACCTCAGACCGTGGAAAATGAACACCAATGGAATGTCCTAGATAAAACTTCACCTGAATCTGGACATCTTAACCCACCTGCTTCATTCTCCCTGGGTCAAGAGTATTTCTTGGAGGCTTTGCCTAAGGGATCCGCAACTTGGCCGGAGGAGAAGCTTCCAATTTCTAGCTCGAAGGCAAAAACGTCTACAATGCTTAAATCCGAGTACAGGTTCCTGAAATCTTCATGCAGGAGTACCTCTCGTTCTCATGCATGGGGGATGGTCATTGTGACTGCAGGCTGGGATGGTCGGATAAAGACATTCCACAATTACGGATTACCCGTACCCGTTTGA 2121 0.4272 MGSFSEFEECRFFDAQEDVVSIADSVSDGTDTLDIKSTSNGRIGLEGFDYDVWIRSPRSVRERRGKFMKKMGLSVNGIENSVDVVGVVEQEEVRDRVEYSSGAVTRTCDGFEEEFCSSRSSMSCFSGIDSSKEFGLEENLLCQDKNSDKRVECNVDPKGEQRNMRDGRDVVLDRLANTGEPDDSEKPSGVTPSWQTNGNKRSWLRRLRSFTCMLDNQGDNGFGSGCRLQRVKVRQCKKQMKELSALYMRQDIKAHEGSITTMKFSPDGQYLASGSEDGVVRLWQVIEEDMSNEIDISEIDPSSLYFTVNNLSELKPLFMDKEKINKLKSMRKTQDSACIIFPPKIFRLLEKPLHKFYGHRGEVLDLSWSKNNYLLSSSVDKTVRLWQVKSNNCLKVFPHSNYVTCVQFNPVDDNYFISGSIDGKVRIWTIPDCRVIDWTDIRDIVTAVCYRPDGQGGIIGSMAGNCRFYNVSDNQLQLDSQLCLLAKKKFTGRGITGFQFFPQDCNKVMVTCADSQVRILDGLNVIGKYKSVGTGSPMSASFTSDGKHILSASEDSNVYMWNVSQEESIPMKAKKIWSSERFFSNASIAVPWQGLKPQTVENEHQWNVLDKTSPESGHLNPPASFSLGQEYFLEALPKGSATWPEEKLPISSSKAKTSTMLKSEYRFLKSSCRSTSRSHAWGMVIVTAGWDGRIKTFHNYGLPVPV* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2558 706 Gene3D - 489 699 IPR015943 GO:0005515
Ahy17g2558 706 ProSiteProfiles Trp-Asp (WD) repeats profile. 539 571 IPR001680 GO:0005515
Ahy17g2558 706 PRINTS G protein beta WD-40 repeat signature 416 430 IPR020472 -
Ahy17g2558 706 PRINTS G protein beta WD-40 repeat signature 374 388 IPR020472 -
Ahy17g2558 706 PRINTS G protein beta WD-40 repeat signature 271 285 IPR020472 -
Ahy17g2558 706 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 356 390 - -
Ahy17g2558 706 ProSiteProfiles Trp-Asp (WD) repeats profile. 396 430 IPR001680 GO:0005515
Ahy17g2558 706 MobiDBLite consensus disorder prediction 177 197 - -
Ahy17g2558 706 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 396 430 - -
Ahy17g2558 706 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 706 - -
Ahy17g2558 706 PANTHER WD REPEAT DOMAIN 44 6 706 IPR040324 -
Ahy17g2558 706 SUPERFAMILY WD40 repeat-like 247 696 IPR036322 GO:0005515
Ahy17g2558 706 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 293 IPR001680 GO:0005515
Ahy17g2558 706 ProSitePatterns Trp-Asp (WD) repeats signature. 549 563 IPR019775 -
Ahy17g2558 706 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 252 285 - -
Ahy17g2558 706 Pfam WD domain, G-beta repeat 252 283 IPR001680 GO:0005515
Ahy17g2558 706 Pfam WD domain, G-beta repeat 351 386 IPR001680 GO:0005515
Ahy17g2558 706 Pfam WD domain, G-beta repeat 392 428 IPR001680 GO:0005515
Ahy17g2558 706 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 396 IPR001680 GO:0005515
Ahy17g2558 706 Gene3D - 224 488 IPR015943 GO:0005515
Ahy17g2558 706 SMART WD40_4 390 429 IPR001680 GO:0005515
Ahy17g2558 706 SMART WD40_4 658 698 IPR001680 GO:0005515
Ahy17g2558 706 SMART WD40_4 481 521 IPR001680 GO:0005515
Ahy17g2558 706 SMART WD40_4 522 562 IPR001680 GO:0005515
Ahy17g2558 706 SMART WD40_4 245 284 IPR001680 GO:0005515
Ahy17g2558 706 SMART WD40_4 349 387 IPR001680 GO:0005515
Ahy17g2558 706 SMART WD40_4 431 470 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2558 Ahy-Chr17 121157028 121161745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2558 252 480 U-box Gene Family AT1G04510 22.388 4.19e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2558 - - gmx:100817209 976.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2558 17 121157028 121161745 Ahy16g2937 16 143923753 143928773 ECH
Ahy13g2650 13 93543791 93547555 Ahy17g2558 17 121157028 121161745 ECH
Ahy17g2558 17 121157028 121161745 Ahy17g2558 17 121157028 121161745 ECH
Ahy17g2558 17 121157028 121161745 Ahy8g0348 8 7247201 7251919 hybridization