Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2553 ATGAGTGATGCAATAGCGGCTGAATTGATTTCCCAGGTGGTCTTAAATATATTTGATACTGTCAAAGTAGCGAATGAGGTTGTGATTCAGAAGGAAAATTTCAACAAGTTCTCGAGTCAGTTGGAGAAGATCTCTTCTATTTTGAAGTCTTTACCAATAGAGGATATAGAGAATCCTGAGAGCTTGAAAAATGCCTTGGATGTTCTCAACCAAGCTATTACGGTTGCTAAGCAGCTGGTTTTTGATGGGCACGGTAGAAGTAAGATTTATGTTTTGATGAATTCGAGAAGGATGGTTGCACGTTTGAAATGTTGCGGAGAAGAAATAAGGCGAGCCCTGAGGCTGATTCCTCTTGCAAGCAAAGATATAAGCGAGATGTTAGATGTGGAGTATGAAGATGAAGATGAACAAGTTTTGGAAAAAGTTGAGGGTGCGATACAAGAGAGGAATTTGGATGGAACGTATGCGAATGAGTTGTTGTGTTGTATTGCAGATGCCATGGGTGTCCCGAAGGAGAGTGATGCGTTGAAGAGAGAATTCCAAGAGTTGAAACGCGAAATGGAAAGTGCACGGTCCAGGAAAGATGTGGCAGAAGCTCTTCGCATGGAGAAGCTTATTGCAGTGCTTGAAAGGGCTGATTTGATAACCTCAGTGCAAGAGAAAGAAATTAGGTACTTTGAAAAGCGAAATTCTTTGGGCAGGACCCCTTTAGAGCCTCTGCATTCATTTTACTGCCCAATCTCTGGAGATATTATGCTGGACCCTGTTGAAACTTCCTCTCGCAAGACATTCGAGAGAAGTGCAATACAAAGGTGGTTCTCCCAAGGGAACACTCTCTGTCCATTGACCATGTTGCCCCTCGACACTCGAATCTTAAGGCCCAATAAGACTCTTCGCCACTCTATTCAAGAGTGGAAGGACAGGAATACAATCATCACCATTTCTACCATCAAGTCCCTGCTTGAAACAAATGAACAAGAGCAAGTGCTTGAATCCTTAGACAAGCTGCAGGATTTATGCTTAGAGAGACAGATACACCTAGAGTGGTTGAAAATGGAGAATTACATGGCTCTTCTTATTGGACTTCTTGGTTCTAGAAATCGTGAAATAAGGAAGCGTGTTCTGCTCATACTGTCTTTGCTTGCAAAGGATGACACAGACAACAAGCAAGGCATTGCAAAAGTGGATGGTGCACTTCGATCGATTGTTCACTCGCTTGCGCGTCAAATTGAGGAAAGCAAACTAGCATTGAAGTTGCTTTTGGAGTTATCCAAAACTAACACCTTGCTTCAACTCATAGGAAACGTTCAAGGAGGCATACTTCTAATAGTGACAATGTTAAATAGTGATGACGTCGAAGCAGCCAAAATTGCACATGAGCTTCTGGAGAACCTGTCTTTCCTTGACCAAAATGTTATAGAGATGGCAAAGGCAAATTATCTTAAGCCTTTGCTACTGAATCTTTCCACAGGAGCAAAGAATGTGAGAATACTCATGGCCGAAACCGTGTCCGAAATCGAATTGACTGAGCAGAATAAATTGTCCTTAGTTAAAGATGGGGCAGTGAGACCTCTTCTTGGACTGCTCTTGGAAAATGATGTGGAAATCAAGAAAGTGGTTGTAAAGTGTTTACTTAAGCTGTCAAGTTTGCTGGAGAATGGCATGGTGATGATTAAGCAAGGTGTTACTCAACAGCTATTAGAGTTGCTATACTCTCATAGTTTACAGTCACCTGCTCTGCAGGAACTGATCGTTGCAACAATAATGCATCTTGCCATATCAACCACCCACCAACAAGCTGAAGAGGAACGTGTATTGTTGCTTGATTCAGAGGAACAAGTATATAAATTCTTCTCTCTGGTTTCTTTGACAGAACTTGATGTACAAAACATGATTCTCAAAGCCTTTCAGGCACTATGCCAGTCTCTCTCCGGCTTCACCATCAGAATGTGGTTGAGACAGATCTCGGCTGCTAAAGTATTGGTCCAGTTGGTAGAGCTTAACACCCACGCAGTTCGGGTGAATGCCTTGAAGCTTTGTTATTGCTTGACAGAAGATGGTGACCACAGGAATATCTCATCACACATAACTGAAAGGTTCATTAAGGTTTTGATGAACATCATCCAAGCTTCTGATGACGCTGAAGAGATGGTTGCTGCTATCGGCATCATCTCTAGACTACCACAGGAGACACACATAACCGAGTGGCTTCTGGATTCTGGGGCACTTCAAACAATTTCAGCATGCCTCAAAGATCAGCATAAACATGCCTCACACAGAAAGCAAGTGACAGAGAATTCTGTCCAAGCCCTTGGTCGATTTACTGTGTCGGCAAATCCAGAGTGGCAGAAGAGAGTAGCTGAAGCAGGCATGATCCCGGTGTTGGTGCAATTGCTGGCTTCTGGAACACCTCTTTCAAAACAGAAGGCAGCTATTTCGATGAAGCAGCTTTCTGAAAGTTCATACTGCTTGAGCAAGCCGATAAAGAAGGCGAGCGTTTTGAAACGGTGCTTCACAGCACAGGAAATAGGGTGCCCAGCACATCTAGGTACATGTACGATAGAGTCTTCATTCTGCATGTTACAAGGCAAGGCCTTGGAGCCCCTTGTGCGGATGCTCTCGGAACAAGACGTTGGAACATGCGAAGCATCTTTAGATGCTCTAATGACTTTGCTTGACGGCCAAACACAACATAGTGGAAGTAAGGTGCTGGTGGATGCAAACGCTGTTGCACCAATGATAAAGCTCTTGAGTGTTCCAGCTTCAAGGTTGCAGGAAAAAACTCTAACAGCATTAGGCCAAATCTTTCAACTTGATGAAGTGAGAAATAAGTATAAGGCTATGGCCACAATGCCCTTGGTGGACATAACTCAGAGCAAAGACAGCCGTTTGAAAAGTCTTGCAGCTAAAGGCCTTGCTCAATTAGGTCTACTTGATAAACAATCTTCTTATTTTTAG 2958 0.4317 MSDAIAAELISQVVLNIFDTVKVANEVVIQKENFNKFSSQLEKISSILKSLPIEDIENPESLKNALDVLNQAITVAKQLVFDGHGRSKIYVLMNSRRMVARLKCCGEEIRRALRLIPLASKDISEMLDVEYEDEDEQVLEKVEGAIQERNLDGTYANELLCCIADAMGVPKESDALKREFQELKREMESARSRKDVAEALRMEKLIAVLERADLITSVQEKEIRYFEKRNSLGRTPLEPLHSFYCPISGDIMLDPVETSSRKTFERSAIQRWFSQGNTLCPLTMLPLDTRILRPNKTLRHSIQEWKDRNTIITISTIKSLLETNEQEQVLESLDKLQDLCLERQIHLEWLKMENYMALLIGLLGSRNREIRKRVLLILSLLAKDDTDNKQGIAKVDGALRSIVHSLARQIEESKLALKLLLELSKTNTLLQLIGNVQGGILLIVTMLNSDDVEAAKIAHELLENLSFLDQNVIEMAKANYLKPLLLNLSTGAKNVRILMAETVSEIELTEQNKLSLVKDGAVRPLLGLLLENDVEIKKVVVKCLLKLSSLLENGMVMIKQGVTQQLLELLYSHSLQSPALQELIVATIMHLAISTTHQQAEEERVLLLDSEEQVYKFFSLVSLTELDVQNMILKAFQALCQSLSGFTIRMWLRQISAAKVLVQLVELNTHAVRVNALKLCYCLTEDGDHRNISSHITERFIKVLMNIIQASDDAEEMVAAIGIISRLPQETHITEWLLDSGALQTISACLKDQHKHASHRKQVTENSVQALGRFTVSANPEWQKRVAEAGMIPVLVQLLASGTPLSKQKAAISMKQLSESSYCLSKPIKKASVLKRCFTAQEIGCPAHLGTCTIESSFCMLQGKALEPLVRMLSEQDVGTCEASLDALMTLLDGQTQHSGSKVLVDANAVAPMIKLLSVPASRLQEKTLTALGQIFQLDEVRNKYKAMATMPLVDITQSKDSRLKSLAAKGLAQLGLLDKQSSYF* 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2553 985 Coils Coil 173 200 - -
Ahy17g2553 985 SMART Ubox_2 242 305 IPR003613 GO:0004842|GO:0016567
Ahy17g2553 985 ProSiteProfiles U-box domain profile. 238 312 IPR003613 GO:0004842|GO:0016567
Ahy17g2553 985 SUPERFAMILY ARM repeat 482 894 IPR016024 -
Ahy17g2553 985 Gene3D - 620 842 IPR011989 -
Ahy17g2553 985 SUPERFAMILY ARM repeat 313 505 IPR016024 -
Ahy17g2553 985 SUPERFAMILY ARM repeat 858 979 IPR016024 -
Ahy17g2553 985 Gene3D - 316 600 IPR011989 -
Ahy17g2553 985 Gene3D - 6 120 IPR036537 GO:0007166
Ahy17g2553 985 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 985 - -
Ahy17g2553 985 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 44-LIKE 6 985 - -
Ahy17g2553 985 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 315 IPR013083 -
Ahy17g2553 985 SUPERFAMILY RING/U-box 228 311 - -
Ahy17g2553 985 Gene3D - 845 983 IPR011989 -
Ahy17g2553 985 CDD RING-Ubox_PUB 243 284 IPR045210 -
Ahy17g2553 985 SMART arm_5 779 819 IPR000225 GO:0005515
Ahy17g2553 985 SMART arm_5 509 549 IPR000225 GO:0005515
Ahy17g2553 985 SMART arm_5 426 467 IPR000225 GO:0005515
Ahy17g2553 985 SMART arm_5 550 593 IPR000225 GO:0005515
Ahy17g2553 985 SMART arm_5 730 776 IPR000225 GO:0005515
Ahy17g2553 985 SMART arm_5 896 937 IPR000225 GO:0005515
Ahy17g2553 985 Pfam U-box domain 243 309 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2553 Ahy-Chr17 120980408 120984513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2553 242 985 U-box Gene Family AT1G76390 25.750 9.22e-49 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2553 - - adu:107460521 1785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2553 17 120980408 120984513 Ahy17g2553 17 120980408 120984513 ECH
Ahy17g2553 17 120980408 120984513 Ahy8g0343 8 7110393 7114525 hybridization