Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2523 ATGGACAACACCATTGACCAGTTGAAATCATCTTCCTCTTCGGAAGAGGATCAGATGGACTTGATGAACATGATGATGATGCAACTTCCTAACGAATTCTCTTCACCTAATTACGCTGATGAGACCAGCGTGCAAGGATTCCACCCATCACCACAGTTTCTTGGTGCACGCAGTGGCAGTACTATGCAACTATCAGATTCAATCGATAACAGAAATTCTATCATGCCCTGGTCTTCACCATCAACCACAATCTCTTTCTCTAACAACAACCCTACCTCAATGCTTCAAACAGAATTGCCATCTTTGTTGGGAAATTCAGGTGCAACGGAGAATAAGCGGAACTCAATGGCGGCGATGAGGGAGATGATATTCAGAATAGCGGCCATGCAGCCAATACACATAGACCCTGAGTCAGTAAAGCCACCAAAGAGGAGGAACGTGAAGATCTCGAAGGATCCACAGAGTGTGGCGGCGCGGCACAGGAGAGAAAGGATAAGCGAGAGAATAAGGATACTGCAGAGACTGGTCCCCGGAGGAACCAAGATGGACACTGCTTCAATGCTTGATGAGGCCATTCACTATGTCAAGTTTCTCAAGGCCCAGATTCACTCATTGGAACGTGCTTCTTCTTCTGCAAACAATAATAATAATAATAATGCAACTGCATCAGGTGCAGCTGCAGCTACTGCCACTCTCAATGCCCCTGGCGCCTCTTATCTTTCTCTACCTAAACCTTATCAAGGTCGAAATGCTCACCATTATGGAGATGCATGA 774 0.4599 MDNTIDQLKSSSSSEEDQMDLMNMMMMQLPNEFSSPNYADETSVQGFHPSPQFLGARSGSTMQLSDSIDNRNSIMPWSSPSTTISFSNNNPTSMLQTELPSLLGNSGATENKRNSMAAMREMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKAQIHSLERASSSANNNNNNNATASGAAAATATLNAPGASYLSLPKPYQGRNAHHYGDA* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2523 257 Pfam Helix-loop-helix DNA-binding domain 158 198 IPR011598 GO:0046983
Ahy17g2523 257 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 5 248 - -
Ahy17g2523 257 SMART finulus 155 204 IPR011598 GO:0046983
Ahy17g2523 257 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 5 248 IPR045843 GO:0003700|GO:0006355
Ahy17g2523 257 Coils Coil 195 215 - -
Ahy17g2523 257 Gene3D - 148 222 IPR036638 GO:0046983
Ahy17g2523 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
Ahy17g2523 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 208 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2523 Ahy-Chr17 119942661 119943892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2523 75 227 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 66.013 6.80e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy17g2523 HLH 1.50E-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2523 - - aip:107607656 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2523 17 119942661 119943892 Ahy17g2523 17 119942661 119943892 ECH
Ahy17g2523 17 119942661 119943892 Ahy8g0315 8 6511936 6513277 hybridization