Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2514 ATGGCTGTGGCAATAGGAAGAAACTTCCATTTTCAGCCATGCTCTTCCTTCAAAAGTAAGAGCATCTTCATACATAAACCTTCACCAGGCATAACATACTTGTGGCTCCACCCTGCTGCAGGAGCCAGAGTCGCTAATGGACGCAGTAGGCAAATTTGTGCGGCGGTGCAACAGCGAGCAACATGGCTCCCAGGGCTCGATCCCCCGTCCTATCTCGACGGAACTTTGGCTGGAGATTTCGGGTTTGACCCTCTTGGACTTGGAGAGGATCCTGAAAGCTTGAGATGGTACGTGCAAGCAGAACTAGTCCACTGTCGCTTTGCCATGCTTGGAGTCCTGGGAATTCTTGTCACAGATTTACTCCGTGTCACAGGACTTAGTAAGATACCAGTTTGGTTTGAAGCGGGTGCAGCGAAATATGACATTGCCAACACACAGACCCTTTTAGTTGTTCAACTAATCTTGATGGGGTTTGTTGAAACAAAAAGGTACATGGATTTTGTTAGCCCTGGATCTCAAGCTAAAGCCTCCTTCTTTGGAATAGAAGATTCATTTGAAGGCTTGGAGCCAGGCTATCCTGGGGGACCTATATTAAATCCCCTTGGCCTAGCCAAAGACATAAAAAATGCTCATGACTGGAAGCTTAAAGAGATCAAGAATGGGCGACTCGCAATGGTGGCAATGCTTGGGATTTTTGTGCAAGCTTCGGTGACTCATGTTGGACCAATTGATAACCTTGTGGAGCATCTCTCCAATCCATGGCATAAGACTATTATTCAGACCCTTGCCAATTCTTAG 798 0.4674 MAVAIGRNFHFQPCSSFKSKSIFIHKPSPGITYLWLHPAAGARVANGRSRQICAAVQQRATWLPGLDPPSYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHCRFAMLGVLGILVTDLLRVTGLSKIPVWFEAGAAKYDIANTQTLLVVQLILMGFVETKRYMDFVSPGSQAKASFFGIEDSFEGLEPGYPGGPILNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQTLANS* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2514 265 SUPERFAMILY Chlorophyll a-b binding protein 55 263 - -
Ahy17g2514 265 Pfam Chlorophyll A-B binding protein 68 235 IPR022796 -
Ahy17g2514 265 PANTHER PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 5, CHLOROPLASTIC 1 263 - -
Ahy17g2514 265 Gene3D Chlorophyll a/b binding protein domain 69 255 - -
Ahy17g2514 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 263 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2514 Ahy-Chr17 119598811 119600327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2514 49 259 Chloroplast and Mitochondria Gene Families AT3G61470 46.698 4.99e-61 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2514 K08911 - gmx:100804934 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2514 17 119598811 119600327 Ahy17g2514 17 119598811 119600327 ECH
Ahy17g2514 17 119598811 119600327 Ahy8g0304 8 6302619 6304071 hybridization