Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2426 ATGGCAAGTGGGTTTGGGGAATCAACGAGCAAGTCTCCCCCAAGCCCTTCGTACTCGAACAACAGCAATAACAACAATGATGCTGGCAATTTTGAATGCAACATATGCTTCGATTTAGCACAAGACCCAATTATCACTTTGTGTGGCCACCTCTTCTGCTGGCCATGTCTCTACAAGTGGCTTCACCTCCACTCGCAATCGCAAGAATGCCCCGTCTGCAAGGCCGCCATTGAGGAGGAGAAGCTGGTTCCATTGTATGGGAGAGGGAAGACATCAACTGACCCGAGATCAAAAACTATTCCGGGTCTTAATATCCCTCATCGTCCTACCGGTCAGAGACCTGAAACTGCAGCTCCTCCTCCCGAAGCAAACCATTTTCATCAACATGGATTTGGTCTAATGGGTGGCTTGGGAGGCTTTGCACCAATGGCGACTGCAAGATTTGGGAATTTCACCTTGTCTGCGGCATTTGGTGGTTTTATACCATCCTTGTTCAACTTTCAATTGCACGGATATCATAATGGGTCCATGTATGGTGGAGCAGCTGGTTATCCTTATGGATACTCTAATTCATTTCACGGTGTCCATGCTCATAGATATCCTCTGCATGCTGGTCAAGGGCAACAAGATTATTACCTGAAGAGGCTCCTTCTGTTTGTCGTCTTCTTTGTTGTCCTTGCTTTTATCTGGCAATAG 696 0.4698 MASGFGESTSKSPPSPSYSNNSNNNNDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHLHSQSQECPVCKAAIEEEKLVPLYGRGKTSTDPRSKTIPGLNIPHRPTGQRPETAAPPPEANHFHQHGFGLMGGLGGFAPMATARFGNFTLSAAFGGFIPSLFNFQLHGYHNGSMYGGAAGYPYGYSNSFHGVHAHRYPLHAGQGQQDYYLKRLLLFVVFFVVLAFIWQ* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2426 231 PANTHER OS12G0636000 PROTEIN 2 231 - -
Ahy17g2426 231 SMART ring_2 33 73 IPR001841 -
Ahy17g2426 231 ProSiteProfiles Zinc finger RING-type profile. 33 74 IPR001841 -
Ahy17g2426 231 MobiDBLite consensus disorder prediction 87 122 - -
Ahy17g2426 231 SUPERFAMILY RING/U-box 30 86 - -
Ahy17g2426 231 MobiDBLite consensus disorder prediction 1 23 - -
Ahy17g2426 231 CDD RING-HC_AtRMA_like 31 75 - -
Ahy17g2426 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 87 IPR013083 -
Ahy17g2426 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 231 IPR045103 GO:0005783|GO:0006511|GO:0061630
Ahy17g2426 231 Pfam Zinc finger, C3HC4 type (RING finger) 31 78 - -
Ahy17g2426 231 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2426 Ahy-Chr17 116146090 116147876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2426 31 214 C3H Transcription Factor Family AT1G19310 67.196 7.42e-88 257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2426 17 116146090 116147876 Ahy17g2426 17 116146090 116147876 ECH
Ahy17g2426 17 116146090 116147876 Ahy8g2812 8 51628367 51630047 hybridization