Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2332 ATGATGGGAATGGAGGAGAGGAAACAGGCGAAGAAACCAGCACAAGCCAGCTCCAGAAAGGGTTGTATGAGAGGGAAAGGTGGCCCTGAGAATGCGAGCTGCACCTATAAGGGTGTTAGGCAGAGAACTTGGGGCAAATGGGTTGCTGAGATCCGTGAACCCAATCGTGGTGCTCGTCTCTGGCTTGGTACCTTTGAGACCTCTCATGAAGCTGCTCTTGCTTATGATACTGCTGCTCGTAAGCTCTATGGCCCTGATGCTAAGCTCAATCTCCCTCTTCATCACCATCACCATTCTTCTTCTTCTTCTTCTTCTTCTAGTAATTCCTCCCAAATTCAACACAACCACCCTCTTATTAATAATATTATTACTACTCCACCACCAGCAACACCACTTATTAGTTCTTCTTGTAATAATAGCTTCAACACAGCGTCGTCCATGGTGGCCTCTCTTCATCAGCAAGTTGGGCCACCAATATACAGCAGTGATTCTTCATCCATTGTGTCTTCTTCCCTTCCATTGGACACCACCAACAATAAGGAGGAGGATGTTCTTCGACCGTTCTGGGGATCAGTGAATGATTGTTTGCCTGTGTTTGATGAATCAATCTGGACAGAAGCAGCCATGTCCCTTGATTTCCCTGTAATTGCTGCTGCAGAGGCTGCCACTGGAATTTACCCAAACGCCAACTTGGCAGATGTTGGTGTTTGGGACACCCCATGGTGCATGTAA 732 0.4713 MMGMEERKQAKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDTAARKLYGPDAKLNLPLHHHHHSSSSSSSSSNSSQIQHNHPLINNIITTPPPATPLISSSCNNSFNTASSMVASLHQQVGPPIYSSDSSSIVSSSLPLDTTNNKEEDVLRPFWGSVNDCLPVFDESIWTEAAMSLDFPVIAAAEAATGIYPNANLADVGVWDTPWCM* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2332 243 MobiDBLite consensus disorder prediction 96 113 - -
Ahy17g2332 243 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Ahy17g2332 243 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Ahy17g2332 243 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Ahy17g2332 243 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Ahy17g2332 243 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Ahy17g2332 243 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Ahy17g2332 243 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677
Ahy17g2332 243 MobiDBLite consensus disorder prediction 90 113 - -
Ahy17g2332 243 Pfam AP2 domain 35 84 IPR001471 GO:0003700|GO:0006355
Ahy17g2332 243 MobiDBLite consensus disorder prediction 1 34 - -
Ahy17g2332 243 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 10 220 - -
Ahy17g2332 243 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2332 Ahy-Chr17 112602934 112604177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2332 1 110 AP2-EREBP Transcription Factor Family AT1G75490 71.818 2.00e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy17g2332 AP2 2.80E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2332 - - gmx:100797850 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2332 17 112602934 112604177 Ahy17g2332 17 112602934 112604177 ECH
Ahy17g2332 17 112602934 112604177 Ahy8g0086 8 1474005 1474718 hybridization
Ahy16g0102 16 1009161 1011665 Ahy17g2332 17 112602934 112604177 PCT
Ahy6g1242 6 18483539 18485883 Ahy17g2332 17 112602934 112604177 PCT
Ahy17g2332 17 112602934 112604177 Ahy16g0102 16 1009161 1011665 PCT
Ahy17g2332 17 112602934 112604177 Ahy6g1242 6 18483539 18485883 PCT