Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2324 ATGGCTGGGTTCTTCTCTCTAGGTGGAAGGGGAGCTGGCCCACACAGCAACAAGGAAGAAGAAGGAGAAAGAGTAGCAGAAAAACATCATCAAGACCATCACAACAGCAATAGCCTATTCTTGTTCAGGAACAACGAGGAGGTGTACAACAAAGGAGGATTCGAGATATGGCCGCAGCCCTACCACCAAAACCAAGGTTTCAGCAACTACTACTCGTTTGGGGTGGGTCCTAGTACTCATCAACATAGAAGGAACAACAACAACAACGACAACTCCAACAACAACTCCAACGACGAAGGCGTCTCCTTCTGTGTCTCGGATGAGTCGACGAGATTTGGACTGACGATGATGAGGTCCTCCGGTGGTGGTGGAGGCACGGGGAGCGGCGGCGGTGGCGGTGGCGTAAACTGCCAGGACTGCGGGAACCAAGCAAAGAAAGACTGTGCTCACCTGAGATGCAGGACTTGTTGTAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTGAAGAGCACTTGGGTTCCCGCCGCAAAACGCCGTGAACGACAGCAACAACTCGCTGCCTTGCAGCAACAGCAATTGCACAGTGCAGACACTTCTTCTAAACGACACAGAGACACTCATCCAGCTCTTGACACTCTTCCTTGCGCTCCTCCTGTTCCCACCATCACCACCACAGGGTTGGAACTGGGTCAATTCCCTTCAGAAGTAAGCTCATCAGCGGTGTTTAGGTGTGTGAAAGTTAGCGCAATAGACAGTGTAGATGAACAGTATGCATATCAAACCGCTGTCAACATCGGAGGCCATGTTTTCAAGGGAATTCTCTACGATCAAGGTCCCCAAGGACTTTACACTACTGCCATTGTTGCCGAGGGTTCTTCCGCTGGAGGAGGAGGAGGAGGAGGAGCTGAACCTCAACAACAACTCAGCCTCATAACAGCTGCAACCACCACCGCTGGGAACCCCTTTGACCCTTCTTCGCTTTACCCGGCTCCACTCAACGCTTTCATGGCTGGTACGCAATTCTTCCCACCACCAAAGTCCTAA 1044 0.5192 MAGFFSLGGRGAGPHSNKEEEGERVAEKHHQDHHNSNSLFLFRNNEEVYNKGGFEIWPQPYHQNQGFSNYYSFGVGPSTHQHRRNNNNNDNSNNNSNDEGVSFCVSDESTRFGLTMMRSSGGGGGTGSGGGGGGVNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQQLHSADTSSKRHRDTHPALDTLPCAPPVPTITTTGLELGQFPSEVSSSAVFRCVKVSAIDSVDEQYAYQTAVNIGGHVFKGILYDQGPQGLYTTAIVAEGSSAGGGGGGGAEPQQQLSLITAATTTAGNPFDPSSLYPAPLNAFMAGTQFFPPPKS* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2324 347 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 231 279 IPR006511 -
Ahy17g2324 347 MobiDBLite consensus disorder prediction 188 217 - -
Ahy17g2324 347 Pfam Domain of unknown function (DUF702) 134 280 - -
Ahy17g2324 347 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 345 IPR007818 GO:0003700|GO:0006355
Ahy17g2324 347 MobiDBLite consensus disorder prediction 72 101 - -
Ahy17g2324 347 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 345 - -
Ahy17g2324 347 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 136 178 IPR006510 -
Ahy17g2324 347 MobiDBLite consensus disorder prediction 1 34 - -
Ahy17g2324 347 MobiDBLite consensus disorder prediction 14 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2324 Ahy-Chr17 112188418 112191351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2324 1 347 C2H2 Transcription Factor Family AT1G75520 44.297 1.15e-84 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Ahy17g2324 DUF702 1.70E-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2324 - - aip:110264314 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2324 17 112188418 112191351 Ahy17g2324 17 112188418 112191351 ECH
Ahy16g0098 16 948048 950013 Ahy17g2324 17 112188418 112191351 ECH
Ahy17g2324 17 112188418 112191351 Ahy13g0748 13 7833116 7834599 ECH
Ahy13g0748 13 7833116 7834599 Ahy17g2324 17 112188418 112191351 ECH
Ahy17g2324 17 112188418 112191351 Ahy8g0092 8 1559607 1562513 hybridization
Ahy16g0098 16 948048 950013 Ahy17g2324 17 112188418 112191351 PCT
Ahy6g1247 6 18606309 18608062 Ahy17g2324 17 112188418 112191351 PCT
Ahy17g2324 17 112188418 112191351 Ahy16g0098 16 948048 950013 PCT
Ahy17g2324 17 112188418 112191351 Ahy6g1247 6 18606309 18608062 PCT