Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2280 ATGTCAACTTCAGGGGAGGATAAAAAATCCCAATTAAAGCATCGATTCCATCCACATTCTCATTCTCTTTCTCAATCCCTTGCCCATTCCATACTCCCTAACCCACCCCAGTTGACTCAAACATGTGCAATCAGTAGTTTCAACTTCAACAATCATAATCACAATCACACAAGTAATCATCGTCAACTACCTCCTACTTTCTACAATCAAACTCAGCCTCCCATTAGGGCAGAGAATCAAACCACCAGATATACAAAACATGCCACTCACAAACCTAATGCTACTGAAGCTCCTCATTTGGCTGCAGTTAACAACTGTCGTTATGACAGTTCCTTAGGGTTGTTAACCAAGAAATTTGTCTGCTTGATTGAAGCGGCTGACTATGGTACCTTGGATTTAAATAAAACTGCTGAGACCTTGGAGGTTTACACAATGATTTTTCCTCCCTCTGCTCATATGAATTTAATTTCCCTAGCAAAATATATTTATACATGCTACCCTTATATATGTTTCTATGGGCAGGTTCAAAAACGAAGAATTTATGATATTACAAATGTTCTCGAAGGAATAGGATTGATAGAGAAGACTTCAAAGAATCATATACGGTGGAAGGGATGTAATGGACATGGAGCCCAAGAACTGGATTATCAACTCAAAAGACTTAAGACTGAAGTTGAAAATCTGTACGCTGAAGAATCTGCACTCGACGATTGTATAAGGCAAAAGCAAGAGCTAATAAAAAACCTGGAGGAAAATGAAAACTCTCAAAGGTACCTTTTCTTGACAAATGAAGATATTCTTAACCTTCCATGCTTCCAGAACCAAGAGCTTATTGCAATCAAGGCTCCAAAATTTAGTGTTGTAGAGGTTCCCGATCCTGATCAGGAGTTAGGTTTCCGGCATTACAAAATGACTGTTAGAAGTGCAACTGGACCAATATATATATATCTATTGAGCAAGAAAGGTCTTAAGTGTAAGAGTGATACTATCGAGCAGGTTAAGCTAATAGATCCATCATGGAATGGTAATCACTGCAAAATGAGGGACATGATATTATCAGCAAGCAAGGCTGATCTAAAAAATCCTGAGGTTTTAACATCCCCGGGCTCAGAGGCATTTGGAATCCAAGAAATTACTCCTATGGAATTTAAAATGGATGATGACTATTGGTTTGAATCAGATGCTGGAGTGACCCTAACAGATTTGTGGGTTAACAATAACTTCTAA 1227 0.3839 MSTSGEDKKSQLKHRFHPHSHSLSQSLAHSILPNPPQLTQTCAISSFNFNNHNHNHTSNHRQLPPTFYNQTQPPIRAENQTTRYTKHATHKPNATEAPHLAAVNNCRYDSSLGLLTKKFVCLIEAADYGTLDLNKTAETLEVYTMIFPPSAHMNLISLAKYIYTCYPYICFYGQVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGCNGHGAQELDYQLKRLKTEVENLYAEESALDDCIRQKQELIKNLEENENSQRYLFLTNEDILNLPCFQNQELIAIKAPKFSVVEVPDPDQELGFRHYKMTVRSATGPIYIYLLSKKGLKCKSDTIEQVKLIDPSWNGNHCKMRDMILSASKADLKNPEVLTSPGSEAFGIQEITPMEFKMDDDYWFESDAGVTLTDLWVNNNF* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2280 408 PANTHER TRANSCRIPTION FACTOR E2FC 174 405 - -
Ahy17g2280 408 SMART E2F_TDP_2 107 205 IPR003316 GO:0005667|GO:0006355
Ahy17g2280 408 Coils Coil 235 255 - -
Ahy17g2280 408 Pfam E2F/DP family winged-helix DNA-binding domain 109 205 IPR003316 GO:0005667|GO:0006355
Ahy17g2280 408 Coils Coil 211 231 - -
Ahy17g2280 408 PANTHER TRANSCRIPTION FACTOR E2FC 20 142 - -
Ahy17g2280 408 Gene3D - 211 321 - -
Ahy17g2280 408 Pfam E2F transcription factor CC-MB domain 221 318 IPR032198 GO:0046983
Ahy17g2280 408 Gene3D - 102 207 IPR036388 -
Ahy17g2280 408 PANTHER TRANSCRIPTION FACTOR E2F 20 142 IPR015633 GO:0000978|GO:0006357
Ahy17g2280 408 MobiDBLite consensus disorder prediction 1 32 - -
Ahy17g2280 408 CDD E2F_DD 217 320 IPR032198 GO:0046983
Ahy17g2280 408 SUPERFAMILY E2F-DP heterodimerization region 217 320 IPR037241 -
Ahy17g2280 408 PANTHER TRANSCRIPTION FACTOR E2F 174 405 IPR015633 GO:0000978|GO:0006357
Ahy17g2280 408 SUPERFAMILY "Winged helix" DNA-binding domain 110 206 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2280 Ahy-Chr17 110337568 110340904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2280 101 407 E2F-DP Transcription Factor Family AT1G47870 46.753 7.87e-82 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Ahy17g2280 E2F_CC-MB 2.10E-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2280 K06620 - gmx:100797301 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2280 17 110337568 110340904 Ahy17g2280 17 110337568 110340904 ECH