Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2236 ATGGTTACCAGCGCGGCTGATTCTTCCTCTAACCACCACTCTCCCATTGTTGCTGCCGCCACAACCACAAATGTTCCCACCAGTAACCTTAATTTCCCGCGAAAAAACCTGCCTTCTCCTTGGGCTCAAGTCGTTCGCGGCCCCGACGTTGAGCCACCCTCCGCCGCCGTCCACGAATTGCTGTCGCCATCGTCTTGCTCGTCCTCCTCTGCAACCGACCAACTGCTGCAATCCTCCGATCCCTCGCCGCTGGTTGAAAGTTCTAATTCCGATGGCGCCACCGCGGCTGCAGCAAGTGTAGATAGCTTGGATGCTGATAAGGCGGGCAATAATGCGGGTGGACCTAAGAAACCCGCGTGGAGGAGGCAATCCAACGGCGTAGAAGATGCTTGTGCTGTGAAGGTAATGGACGCTGTTTCTTGGCCCGCTTTGTCAGATTCCACCAAGCCTACCACTAAGTTGTCACCTGAGGCCTCATCTTCCAAGACTGCTTTTGATGGATCGCAACCTACTCCTCGGGGTCCGGTTGCTTTACACTCTCCTCGAAAGCAAGGAGTTGGCAATGCAAGACCTAATCCAGCATCAGTTTATGGTGGGGCTGGTAGACAAAGACTAATAATAAAGCGTGGAGGCGGCAATGTCAATGGCAATGGCAATGGTGCTGGCCCTGTTCAAGCAATGAGGAGCTTCTCTGCTCCTCCTCCTCCACCACCACCACCCCCTTTTCCTGTAATTCAGATGCCTCCAACTAGCTTTCCTAATGGGGTAGCAGGGGTGGCAGCCCTTGTTCCAAGAGATCCTTACAGGAATAGTAGCTGGGGTGCAAGGTCTTCGGTTGGGAGTTTCGTGCCACCAATGATTGAACATAGGAGTCCATCTCGCAGGGTAAATTTTGGGCATCATCCACGTACTGGTGGTTCTTTTCATAATTATGGCAGCCGGAGTGATCAGGATCGCCAAAATTATGCACATACCAGAGATCCTCAGTTACACCCGCCAAGGATGTTTCCAACACGAGCAATGAGCCCGCTTCCACCTAATACCCCTTCATTTGCAGGTCCTCAGCCTATACCACCGTTTGTAAACCATGCTGGCTTTCCTGAATATTGTTATTTTCCAACGTTACAATTTGAACCATTTGGGGGTATGCCATTCTTTACCCATGGACCTCCTGCTGCAATGTTCTATCCTGTTGCAGAAACTTCTCTTGTCAATGCAATAGTCAAGCAAATTGATTATTATTTTAGTGATACTAATTTAGTGAAAGATGAGTTTTTACGTTCTAACATGGATGATCAGGGCTTTGTTCCAATTAGATTGGTTGCAAGCTTTCGTCGTGTTAAAAGTTTGACAAGCAATGTTGAGTTGATTATAGATTCATTGAGAATATCTACTATTATAGAAGTGAAGGGTGATAAGTTGAGGAGGCGGAAGGATTGGATGAAGTGGCTGCCCTCTCCTTTGAATCGGGCAGATTTTGGTTCAACATCTATGGGTGGATCAAGTTATAATAACTCGGCAACTGATTTTGAAAATATCACTTTGGATAAGACCACTGTGGATAGACTTAATTCCAATTCTATCACAACCAGTGATGGCAATGTGAATGAAGAGTCCTCTAGTTCGTATCAATTCCATAATCATGATGCTATGCTTAGCAGCAATTAA 1668 0.4736 MVTSAADSSSNHHSPIVAAATTTNVPTSNLNFPRKNLPSPWAQVVRGPDVEPPSAAVHELLSPSSCSSSSATDQLLQSSDPSPLVESSNSDGATAAAASVDSLDADKAGNNAGGPKKPAWRRQSNGVEDACAVKVMDAVSWPALSDSTKPTTKLSPEASSSKTAFDGSQPTPRGPVALHSPRKQGVGNARPNPASVYGGAGRQRLIIKRGGGNVNGNGNGAGPVQAMRSFSAPPPPPPPPPFPVIQMPPTSFPNGVAGVAALVPRDPYRNSSWGARSSVGSFVPPMIEHRSPSRRVNFGHHPRTGGSFHNYGSRSDQDRQNYAHTRDPQLHPPRMFPTRAMSPLPPNTPSFAGPQPIPPFVNHAGFPEYCYFPTLQFEPFGGMPFFTHGPPAAMFYPVAETSLVNAIVKQIDYYFSDTNLVKDEFLRSNMDDQGFVPIRLVASFRRVKSLTSNVELIIDSLRISTIIEVKGDKLRRRKDWMKWLPSPLNRADFGSTSMGGSSYNNSATDFENITLDKTTVDRLNSNSITTSDGNVNEESSSSYQFHNHDAMLSSN* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2236 555 MobiDBLite consensus disorder prediction 525 555 - -
Ahy17g2236 555 PRINTS Lupus La protein signature 465 478 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Ahy17g2236 555 PRINTS Lupus La protein signature 410 427 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Ahy17g2236 555 ProSiteProfiles La-type HTH domain profile. 397 486 IPR006630 -
Ahy17g2236 555 CDD LAM 405 478 - -
Ahy17g2236 555 MobiDBLite consensus disorder prediction 144 239 - -
Ahy17g2236 555 SMART la 401 479 IPR006630 -
Ahy17g2236 555 MobiDBLite consensus disorder prediction 60 96 - -
Ahy17g2236 555 MobiDBLite consensus disorder prediction 144 168 - -
Ahy17g2236 555 PANTHER LUPUS LA PROTEIN-RELATED 48 543 IPR045180 -
Ahy17g2236 555 MobiDBLite consensus disorder prediction 292 333 - -
Ahy17g2236 555 SUPERFAMILY "Winged helix" DNA-binding domain 394 485 IPR036390 -
Ahy17g2236 555 MobiDBLite consensus disorder prediction 1 36 - -
Ahy17g2236 555 Pfam La domain 407 462 IPR006630 -
Ahy17g2236 555 PANTHER LA-RELATED PROTEIN 1B 48 543 - -
Ahy17g2236 555 MobiDBLite consensus disorder prediction 1 125 - -
Ahy17g2236 555 Gene3D - 396 485 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2236 Ahy-Chr17 108273863 108276496 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2236 K18757 - gmx:100775279 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2236 17 108273863 108276496 Ahy17g2236 17 108273863 108276496 ECH
Ahy17g2236 17 108273863 108276496 Ahy8g0146 8 2722468 2725188 hybridization
Ahy16g0042 16 371942 376175 Ahy17g2236 17 108273863 108276496 PCT
Ahy6g1299 6 19620345 19624713 Ahy17g2236 17 108273863 108276496 PCT
Ahy17g2236 17 108273863 108276496 Ahy16g0042 16 371942 376175 PCT
Ahy17g2236 17 108273863 108276496 Ahy6g1299 6 19620345 19624713 PCT