Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2233 ATGGCTAAATCCATGCTTGTTTTTGCTACCTTCCTCTCATTTTGTTTTACTACTAATACTTGCGCCTTCTCACCTTCTGCATGGACCAGCGGCCATGCAACTTTTTATGGAGGCAGCGATGCCTCAGGCACAATGGGAGGTGCTTGTGGATATGGGAACCTGTATTCAGCAGGGTATGGTACTAGAACTGCAGCATTAAGTACTGCTCTGTTCAATGATGGAGCTTCGTGTGGTGAGTGCTACAAAATTATATGTGATTTTCGAGCAGATCCTAGATGGTGTGTCAAAGGAACATCCGTCACCATAACAGCTACCAATTTCTGCCCTCCTAACTTTGCACTTCCCAACAACAATGGAGGCTGGTGTAACCCACCGCTCAAGCATTTTGACATGGCTCAACCTGCATGGGAAAAAATTGGCATTTATAGAGGAGGGATAGTTCCCGTTCTGTTCCAAAGGGTTCCATGCAAGAAGAAGCATGGAGGGGTAAGATTCACTGTGAATGGAAGAGACTACTTTGAGCTTGTGTTGATAAGCAATGTGGCAGGAGCTGGATCCATCAAAGCTGCGTCGATTAAAGGATCAAAAACTGGATGGATGACTATGTCAAGAAATTGGGGAGCTAATTGGCAATCCAACGCGTATTTGAATGGCCAATCTTTGTCCTTCAGGGTCACAACCACTGACGGCGAAACCAGACTCTTCCAAGATGTGGTTCCACCAAACTGGTCATTTGGACAGAGTTTCTCTAGCAGTGTCCAGTTCTGA 768 0.457 MAKSMLVFATFLSFCFTTNTCAFSPSAWTSGHATFYGGSDASGTMGGACGYGNLYSAGYGTRTAALSTALFNDGASCGECYKIICDFRADPRWCVKGTSVTITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKKHGGVRFTVNGRDYFELVLISNVAGAGSIKAASIKGSKTGWMTMSRNWGANWQSNAYLNGQSLSFRVTTTDGETRLFQDVVPPNWSFGQSFSSSVQF* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2233 255 PANTHER EXPANSIN 3 255 - -
Ahy17g2233 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Ahy17g2233 255 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Ahy17g2233 255 Gene3D - 162 255 IPR036749 -
Ahy17g2233 255 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Ahy17g2233 255 SMART dpbb_1 63 151 IPR007112 -
Ahy17g2233 255 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Ahy17g2233 255 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Ahy17g2233 255 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Ahy17g2233 255 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Ahy17g2233 255 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Ahy17g2233 255 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Ahy17g2233 255 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Ahy17g2233 255 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Ahy17g2233 255 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Ahy17g2233 255 Gene3D - 14 157 IPR036908 -
Ahy17g2233 255 SUPERFAMILY Barwin-like endoglucanases 27 180 IPR036908 -
Ahy17g2233 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 161 IPR007112 -
Ahy17g2233 255 Pfam Lytic transglycolase 63 150 IPR009009 -
Ahy17g2233 255 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Ahy17g2233 255 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Ahy17g2233 255 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Ahy17g2233 255 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Ahy17g2233 255 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Ahy17g2233 255 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Ahy17g2233 255 PANTHER EXPANSIN-A15 3 255 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2233 Ahy-Chr17 108127740 108130013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2233 63 255 Expansin Gene Family AT1G20190 82.383 6.86e-119 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2233 - - lang:109341531 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2233 17 108127740 108130013 Ahy17g2233 17 108127740 108130013 ECH
Ahy17g2233 17 108127740 108130013 Ahy8g0149 8 2749435 2751112 hybridization
Ahy16g0037 16 350314 351514 Ahy17g2233 17 108127740 108130013 PCT
Ahy6g1304 6 19649544 19650882 Ahy17g2233 17 108127740 108130013 PCT
Ahy17g2233 17 108127740 108130013 Ahy16g0037 16 350314 351514 PCT
Ahy17g2233 17 108127740 108130013 Ahy6g1304 6 19649544 19650882 PCT