Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2213 ATGTCCTCTTCCACCGTTGGCAATGAGGAGGAGAAGCTTTACCCTTCCCCACTAGCCTCTCACGACGACATCGTCAAGGACCCTTCTGTCTTTTGGGACACTCTCAGACGCTTTCACCTCCTTCTCAGTACCAAATTCATCATACTACAACAAGCTAGCTGGAATATGATTTTGATATTCGGGATTCCTGTGATTGGAGGGAAGGAGCTAGATTTGCACGTCCTGTACGTGGAGGTTACGAGGAGAAGTGGCTATGAGAAGGTAGTTGCAGAGAAGAAATGGAGGGAAGTGGGAACTGTCTTCAGGTTCTCAGCGACGACCACAAGCGCCTCTTTTGTGCTCAGGAAACACTACCGCAACCTTCTTTACCATTACGAACAAGTTCACTTCTTTAATGTTAAGGGTCCTCTATACTCTCCATCATCAGATTCATTTTCTGGCAGCAAGCACTCCTGGAGATCTGAGCTGGCTATTGTTGAATATTCTCCCAAGCCAGTGACCCATACTAAAGGTTCCCAACCTCAAGAGTCTATAGACCCTTCATCAAATCTTTCAGGGAGGGGAACGATAGAGGGAAAATTTGAATGCGGCTATTTAGTGTCAGTGAAAGTGGGTTCAGAGGTTCTAAGAGGAGTACTGTACCATCCAGAGGAATTGGTTCCTCCCCCAACTGTTCCACAAAATGGCAATGCCATCGTACCCTACGGCTGCAAACCTCACCATTCCGGCCGCCGGAGGAGGAGGAACAAGAGAAAGTGGGACCCGAACTACCCGAAGCCAAATCGGAGTGGCTATAACTTCTTCTTTGCTGAGAGGCATTACAAGCTCAAGTCACTTTATCCAAACAGAGAGAGGGAGTTTACCAAAATGATTGGCCAGTCTTGGAATAGTCTCAGCCCAGAAGAAAGAATGGTTTACCAGAACATTGGCTTAAGAGACAAAGAAAGGTACAAGAGGGAGTTGAAGGAGTACAAGGAAAAGATGAAGATTATGCAAAATTTAGAAGTTGCGGCGCCCGGAAATCTCACTGGTTCTGTCCTTAATGGTAGCCAAAGAATGGCTTAG 1065 0.4657 MSSSTVGNEEEKLYPSPLASHDDIVKDPSVFWDTLRRFHLLLSTKFIILQQASWNMILIFGIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGTVFRFSATTTSASFVLRKHYRNLLYHYEQVHFFNVKGPLYSPSSDSFSGSKHSWRSELAIVEYSPKPVTHTKGSQPQESIDPSSNLSGRGTIEGKFECGYLVSVKVGSEVLRGVLYHPEELVPPPTVPQNGNAIVPYGCKPHHSGRRRRRNKRKWDPNYPKPNRSGYNFFFAERHYKLKSLYPNREREFTKMIGQSWNSLSPEERMVYQNIGLRDKERYKRELKEYKEKMKIMQNLEVAAPGNLTGSVLNGSQRMA* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2213 354 CDD HMGB-UBF_HMG-box 258 322 - -
Ahy17g2213 354 MobiDBLite consensus disorder prediction 234 258 - -
Ahy17g2213 354 Gene3D - 18 136 IPR036431 GO:0003677
Ahy17g2213 354 MobiDBLite consensus disorder prediction 165 184 - -
Ahy17g2213 354 Pfam HMG (high mobility group) box 258 325 IPR009071 -
Ahy17g2213 354 SUPERFAMILY ARID-like 22 133 IPR036431 GO:0003677
Ahy17g2213 354 SMART hmgende2 257 326 IPR009071 -
Ahy17g2213 354 Gene3D High mobility group box domain 242 338 IPR036910 -
Ahy17g2213 354 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 4 334 - -
Ahy17g2213 354 MobiDBLite consensus disorder prediction 166 184 - -
Ahy17g2213 354 CDD ARID_HMGB9-like 27 126 IPR045303 GO:0003677
Ahy17g2213 354 SMART ARID_2 22 126 - -
Ahy17g2213 354 Coils Coil 314 334 - -
Ahy17g2213 354 MobiDBLite consensus disorder prediction 239 253 - -
Ahy17g2213 354 SUPERFAMILY HMG-box 255 328 IPR036910 -
Ahy17g2213 354 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 4 334 - -
Ahy17g2213 354 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 258 325 IPR009071 -
Ahy17g2213 354 Pfam ARID/BRIGHT DNA binding domain 31 126 IPR001606 GO:0003677
Ahy17g2213 354 SMART bright_3 26 131 IPR001606 GO:0003677
Ahy17g2213 354 ProSiteProfiles ARID domain profile. 25 130 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2213 Ahy-Chr17 106192065 106195203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2213 12 330 ARID Transcription Factor Family AT1G76110 61.920 1.31e-129 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Ahy17g2213 ARID 8.70E-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2213 - - adu:107460270 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2213 17 106192065 106195203 Ahy17g2213 17 106192065 106195203 ECH
Ahy17g2213 17 106192065 106195203 Ahy8g0163 8 3110048 3113197 hybridization