Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2188 ATGGGTATCTCTGCGATTCCATTCGATTCTACCACGAAGGTGTTGTTCTGTCATTTGCGTCTGTTCTCTCTCCCCAAGGTTCCTCTTTCTGTCTCTCTCTCGTGCATGCGGCATTTCTCCATCTCCATTTCCGTGATTTGGATAGCAGATGTCGCCACCGCGGTTCAAGAGAGGGAATCATGGAAAGTGCATGTTAAAGTTGTGAAGTTGTGGTACCACAAGAATCCTGCTTTGGATCCTTCTCAAAATCTGTTGCATATGGTCTTAATGGATGAGAAGTTACACAAGATCCAAGCTACGATTAGAGATCAGCTTATATCAAAGTTTGCTGTGTCTCTAAATGAAGGTGATCTGTATTTGATGACCCATTTTACAGTTTTGCCAAACACTGGTTTGAACAGAGTGATCAAACATCGGTTCAGACTTTTGTTCCAATACAAGACCTCTGTTGTTTCTGTGGTCTCTCCAAGGATACCTCATTCCGGGTTGTGTTTTACATCAATAGATGAAATTGATCAAATGACAAAGGACCACAATTTCCTCATTGACTTTGTTGGGATCATTACTGGTGTTCGAAAAGAAAGAGATGTAGCATCATATGGGAAGCTCATCAAAGCAGTTGTGCTAGAAGTTTTTACTCATGGGAAAAAGGTCCAATGCAATGTGTTTGGAAATGCTTGTGATCTTTTGGAATATGAAAACTTACAAAAATATCCAAGATCTCCGCTGATTGTCCTCGAGTCTTTTAAAATCAAACCAATTGAAGGTGGAGTAATTCTACAGAATGTGATCAATGTCTCTAGGTTATTCATTAATCCAGACATTCCTAAGTCTGTTGAGTTCCTAAGCAGATTTAGTGTAGCCAGTTATGGATTCTCAAGACTTGTGACCAATGACCTTGGATACTTAATTTCTAAAGTTGATGGTGATTATTTCAATCCCAAAGAGATCAGTAATATTCAAGATCTTGATGTAGATAACGGGGATGCTCATTACTTTGTAATTGGGACAATTAAGGAAGTTATGGATGAACCAGATTGGTGGTACTACTCATGTGTATGTGGTCATGCTGTTGTTGACCATGAGGATCTCTACCTTTGTGATGCTTGTGGTTCATGTGTTGAGCATGTTATGCTCAAGTATAGGATTCAGGTAAAGATTCACCATGCTGGGTGTGATGTTTTGTTTGTTCTGCTTGATAATGCGGCAACAAAACTATTTGGAAAAACCTGTTCTGAAGCATTTCTCAGGATAGACGAAGAATTCCCTGTTGATCCTAGTGTGCTTGCAGTCTGTCGGTCATATTCTCCACAAATGTTTGGTGATGTTGTTGGAGAGGATAAAGTTTTCAAGGTTGAAATCCTTTCTGCAGTTGATCCAGATTACTCCGGGTCCTTTAAAATTGTAAATGTCTTTAGTGATAATTCTGAACCAGCTACAACTGATGATTATATGAATGCAAGGCTTCATGATCCGATTTTTCCACCAATCTACGATGCCTATTTGCAGTATGGAAGTGGGGAAGATTACAAGACTCAAGTAGTGTGTGATAATTCTATTCAATCAGAAACTATTGAAGATATTATTACTGATCTTATTTCACCCAATCGCTGCTATTCTGATGTTGAGAATGGTGGTTTTGTTTTTATTCTGGGAACTATATCATCTGTTTTCAAGAATCATAAGTGGTGGTTCTCAACTTGTTTGTGTGGTTCTCTTGTGTCAGCTAATAAACAAATTTTATCCTGTGATCTATGTCAGCTTCAATGCATTGATGCTGTCCCAAGATTCTGCTTGAAGATTGTAGTTTCTCATGCAAATGGCAACAATATATTTGTTCTTAAAGATCGTGAGGTTGTGCAACTGATAAAGACAAGATGCTCTACCTTTTTGGATAATCACCCAGAGTTGAATCAGGGATCTTATTGCAAAGTTGTTCCATTGAAACTCATTTCAAGTCTTTTGCACAAAAAAGTTGTATTCATGGTTGATGCTAGGCCTGTGGGTTGA 2010 0.3861 MGISAIPFDSTTKVLFCHLRLFSLPKVPLSVSLSCMRHFSISISVIWIADVATAVQERESWKVHVKVVKLWYHKNPALDPSQNLLHMVLMDEKLHKIQATIRDQLISKFAVSLNEGDLYLMTHFTVLPNTGLNRVIKHRFRLLFQYKTSVVSVVSPRIPHSGLCFTSIDEIDQMTKDHNFLIDFVGIITGVRKERDVASYGKLIKAVVLEVFTHGKKVQCNVFGNACDLLEYENLQKYPRSPLIVLESFKIKPIEGGVILQNVINVSRLFINPDIPKSVEFLSRFSVASYGFSRLVTNDLGYLISKVDGDYFNPKEISNIQDLDVDNGDAHYFVIGTIKEVMDEPDWWYYSCVCGHAVVDHEDLYLCDACGSCVEHVMLKYRIQVKIHHAGCDVLFVLLDNAATKLFGKTCSEAFLRIDEEFPVDPSVLAVCRSYSPQMFGDVVGEDKVFKVEILSAVDPDYSGSFKIVNVFSDNSEPATTDDYMNARLHDPIFPPIYDAYLQYGSGEDYKTQVVCDNSIQSETIEDIITDLISPNRCYSDVENGGFVFILGTISSVFKNHKWWFSTCLCGSLVSANKQILSCDLCQLQCIDAVPRFCLKIVVSHANGNNIFVLKDREVVQLIKTRCSTFLDNHPELNQGSYCKVVPLKLISSLLHKKVVFMVDARPVG* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2188 669 Pfam Domain of unknown function DUF223 87 179 IPR003871 -
Ahy17g2188 669 Gene3D - 46 154 IPR012340 -
Ahy17g2188 669 PANTHER REPLICATION FACTOR A 1, RFA1 539 630 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy17g2188 669 SUPERFAMILY Nucleic acid-binding proteins 542 663 IPR012340 -
Ahy17g2188 669 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 539 630 - -
Ahy17g2188 669 SUPERFAMILY Nucleic acid-binding proteins 165 287 IPR012340 -
Ahy17g2188 669 Gene3D - 157 291 IPR012340 -
Ahy17g2188 669 SUPERFAMILY Nucleic acid-binding proteins 312 453 IPR012340 -
Ahy17g2188 669 SUPERFAMILY Nucleic acid-binding proteins 58 153 IPR012340 -
Ahy17g2188 669 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 64 415 - -
Ahy17g2188 669 CDD RPA1_DBD_A_like 62 150 - -
Ahy17g2188 669 PANTHER REPLICATION FACTOR A 1, RFA1 64 415 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy17g2188 669 Gene3D - 511 667 IPR012340 -
Ahy17g2188 669 Gene3D - 307 471 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2188 Ahy-Chr17 104580319 104585057 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2188 61 415 Core DNA Replication Machinery Family AT5G45400 19.231 2.91e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2188 - - ahf:112695694 1189.48