Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2186 ATGCCTCCACCATTTGATATGATTTCTAAGATGCATCCTCCTAGAGAGGCTTGGAAGCTGAAAGTTAGGGTTCTAAGGCTTTGGGTTGTACTCTCTTTTGGTAACCATGAGGTTCCTAACTCAATGGAGATGATTCTCCTTGATGAGCATTGTGAAAAAATTCAAGCTACAGTCAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAGTTGAAGGACAAGTTTATAGAATGACATATTTTGCTATTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAACCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTTCCTTTTTCTGAGCTGCTGAACATGACCCAAGATTATGATTTTTTAGTTGATGTCATTGGTCTTTTAACTTCAGTCGGAGAAGAGAAAGAATATGCAAAAGAGGGAAAAATTGTGAAAATGATTGCATTGGAATTAACTTCAAAAGATCTTACAGTGCGATGTGCATTGTTTGGGGATTATGTTAATCAAGTAAATCATTTCCTTGCCTCTGGGTATGTGGAGCAGCCTGTTGTAGTCATTCAACTTGCAAAAGTCAAGTTCTTTAGGGGTCAAGTAGGTCTTCAAAATGTGATGTATGCCACTCAAATGTTATTTAATCCTGATATTTCTGAAGTTGTTGAATTTAGGCAGATTATGATTGAGTAA 735 0.366 MPPPFDMISKMHPPREAWKLKVRVLRLWVVLSFGNHEVPNSMEMILLDEHCEKIQATVKKPLLNRFRDHIVEGQVYRMTYFAIVSNHGSYRATSHEFKLVFLHRTTVVAVDEDVIPKTCFNMFPFSELLNMTQDYDFLVDVIGLLTSVGEEKEYAKEGKIVKMIALELTSKDLTVRCALFGDYVNQVNHFLASGYVEQPVVVIQLAKVKFFRGQVGLQNVMYATQMLFNPDISEVVEFRQIMIE* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2186 244 PANTHER REPLICATION FACTOR A 1, RFA1 22 238 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy17g2186 244 CDD RPA1_DBD_B_like 140 243 - -
Ahy17g2186 244 SUPERFAMILY Nucleic acid-binding proteins 120 240 IPR012340 -
Ahy17g2186 244 CDD RPA1_DBD_A_like 19 107 - -
Ahy17g2186 244 SUPERFAMILY Nucleic acid-binding proteins 3 112 IPR012340 -
Ahy17g2186 244 Gene3D - 114 244 IPR012340 -
Ahy17g2186 244 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 238 - -
Ahy17g2186 244 Pfam Domain of unknown function DUF223 43 135 IPR003871 -
Ahy17g2186 244 Gene3D - 4 112 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2186 Ahy-Chr17 104567128 104568349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2186 8 239 Core DNA Replication Machinery Family AT2G06510 27.572 7.36e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2186 - - ahf:112717561 442.195