Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2078 ATGAAGCCCGCTACCACCAACATGGCTCAGCCGCAGAGTAATTGGGAGGCTGATAAAATGCTTGATGTTTACATCCATGATTATTTTGTAAAGAGAAAATTACATAACACTGCAAAAGCTTTTATGACAGAAGGCAAAGTTTCCACCGATCCTGTAGCAATTGACGCTCCTGGAGGATTTCTGTACGAGTGGTGGTCTGTCTTTTGGGATGTCTTCATCTCAAGGACAAACGAGAAACATTCTGAGGCTGCTGCAGCTTACATTGAGACCCAGCAAATGAAGGCTAGAGAACAACAACTTCAGATGCAACAATTGCAACTTATGCAGCAGCGCGGTGCACAGCTGCAACGACGGGATCCTAATCATCCTCCTCTAGGTGGTTCCTTAAATGCCATGAACTCTGAAGGAATGTTGGGGCAGCAACCAACAAATGTGTTGGCCATGAAAATGTATGAAGACCGAATGAAACACTCTCATTCAATGGAGTCAGAGGCATCTCCAACACTTATCGATGCAAATAGGATGGCCCTTCTTAAATCTGGAACAAGTCATCAAGGTCAGTTGGTCCATGGTAATTCAGGAAATATGTCTACTGCATTGCAGCAACTTCAGGCCCGGACTCCTTTGACAACTGACATCAAAGGAGAAGTCAATTTAGGTGCCACTCCCAAGAGTTTGCCTATGGATAACTCCGTGTACAGACAAGCAATTTTACAATCAAAATCCGGGCTAGGCGGCACAGGGTTAAATCCAGGGGTTACAAGTCTTCCACTAAAGGGGTGGCCCTTAACTGGTATTGATCAACTAAGACCTGGTGGCTTGGGCGTACAAGTTCAGAAGCCTAATTTGACAACTCAAAGCCAATTTCTTTTGGCATCACAACAGCAGCAAGTCTTAGCACAATCTCAGGCACAAAACAACCTTGGAAGTTCTAATAGTCAAGGTGATATGGATCCACATAGACTTTCTACTGTCCCTCGAGGTGGCTTAAGTGCAAAAGATGGTCAATCTACCAGCTCCCAAGTGCAGTCAGGTTCACCTAAGCAGGTGAAGATGTCCCAGGCACAACATTCACTATCTCAACAGGATCATTTGCAGCAGCAGCAACTGCAGCAGAACAACCGAAAAAGGAAACAACATTCTTCTTCTGGACCCGGCAATAGCACTGGTACTGGAAACACAGTAGGTCCTTCACCTAATTCACCACCATCAACTCACACACCTGGTGATGGAATAAATACAGCAAGCAGCATGCAGCATGTTAACAGTATGCCAAAGAGTATGATGATGTATGGTACAGAAGCAACGGGTGGCCTTGCATCGTCTTCTAATTTGCTTCCGGGAGAAGCTATTTTGTCCAATTGTCCTTTGTATCATCATCATCATCATCATCATTTCATAAAGCAGGAGGATATGGACCGATTTGGAGATGTTGGTACTTTAGAGGATAATGTGGAATCCTTTCTATCAAATGATGGAGGAGATGAAGGTAGTCTCTATGGAAGTATAAAACAAAATCCGGCTGAGCAACAAAAGGAACCATCAAAAGGTTTCACCTTTGCTGAATTTGGTTGCATACGAACAAGGAACAGCAAAGTTACTTGCTGTCATTTTTCATCTGATGGAAAATTGCTTGCCAGTGCTGGACATGACAACAAGGTTGTCCTTTGGAACATGGACACTTTACAGACAGAGAGCACTCCAGAAGAACACAAGTTGGTTATTTCAGATGTCCGTTTTAGACCAAATTCATCTCAGTTGGCAACAGCCTCAATCGATAAATCTGTGCGGTTATGGGATGCAGCCAATCCAAGCTATTGTGTGCAAGAATACGGTGGGCACAGTGCAGCAATTATGTCTCTTGATTTCCACCCAAAGAAGACTGATATGTTCTGCTTTTGTGATAGTGAAAATGCAATTCGGTACTATGATATTACTTCATCCTCCTGCACACATGTATTGAAGGGTGGAAATGCTCAAGTGCGGTTTCAGCCTAGAGTGGGGCAAGTACTAGCAGCAGCTTCTGACAAAGTAGTGTCAATTTTTGATGTTGAAACCGACAGACAAATTTATTCACTTCAGGGACACTCTGAAGCGGTGAACTATATTTGCTGGGATGCAACTGGAGATTTCTTGGCAACTGTGAGTCAAAATTTGGTGAAGATTTGGACACTGGCCTCTGGAGAATGCATTCAGGAGCTTAGCTCAAATGCAAACCAGTTCCATTCTTGTGTCTTTCATCCAAGCTATTCAACTTTGTTGGTGATTGGAGGGTTTTCGTCCTTGGAGCTGTGGAACATGGCTGAGAACAAAAGCATGACAATTTCTGCACACGAGAATATAATTTCCGCTTTGGCTCAATCTCCTGTAACTGGAATGGTCGCCTCTGCAAGTCATGACTGCTCTGTTAAGTTATGGAAATAA 2424 0.4365 MKPATTNMAQPQSNWEADKMLDVYIHDYFVKRKLHNTAKAFMTEGKVSTDPVAIDAPGGFLYEWWSVFWDVFISRTNEKHSEAAAAYIETQQMKAREQQLQMQQLQLMQQRGAQLQRRDPNHPPLGGSLNAMNSEGMLGQQPTNVLAMKMYEDRMKHSHSMESEASPTLIDANRMALLKSGTSHQGQLVHGNSGNMSTALQQLQARTPLTTDIKGEVNLGATPKSLPMDNSVYRQAILQSKSGLGGTGLNPGVTSLPLKGWPLTGIDQLRPGGLGVQVQKPNLTTQSQFLLASQQQQVLAQSQAQNNLGSSNSQGDMDPHRLSTVPRGGLSAKDGQSTSSQVQSGSPKQVKMSQAQHSLSQQDHLQQQQLQQNNRKRKQHSSSGPGNSTGTGNTVGPSPNSPPSTHTPGDGINTASSMQHVNSMPKSMMMYGTEATGGLASSSNLLPGEAILSNCPLYHHHHHHHFIKQEDMDRFGDVGTLEDNVESFLSNDGGDEGSLYGSIKQNPAEQQKEPSKGFTFAEFGCIRTRNSKVTCCHFSSDGKLLASAGHDNKVVLWNMDTLQTESTPEEHKLVISDVRFRPNSSQLATASIDKSVRLWDAANPSYCVQEYGGHSAAIMSLDFHPKKTDMFCFCDSENAIRYYDITSSSCTHVLKGGNAQVRFQPRVGQVLAAASDKVVSIFDVETDRQIYSLQGHSEAVNYICWDATGDFLATVSQNLVKIWTLASGECIQELSSNANQFHSCVFHPSYSTLLVIGGFSSLELWNMAENKSMTISAHENIISALAQSPVTGMVASASHDCSVKLWK* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2078 807 ProSitePatterns Trp-Asp (WD) repeats signature. 545 559 IPR019775 -
Ahy17g2078 807 ProSiteProfiles Trp-Asp (WD) repeats profile. 526 567 IPR001680 GO:0005515
Ahy17g2078 807 Pfam LisH 19 45 IPR006594 GO:0005515
Ahy17g2078 807 MobiDBLite consensus disorder prediction 330 418 - -
Ahy17g2078 807 SUPERFAMILY WD40 repeat-like 524 807 IPR036322 GO:0005515
Ahy17g2078 807 MobiDBLite consensus disorder prediction 301 418 - -
Ahy17g2078 807 Coils Coil 88 108 - -
Ahy17g2078 807 MobiDBLite consensus disorder prediction 301 319 - -
Ahy17g2078 807 SMART Lish 17 49 IPR006594 GO:0005515
Ahy17g2078 807 Gene3D - 660 807 IPR015943 GO:0005515
Ahy17g2078 807 ProSiteProfiles LIS1 homology (LisH) motif profile. 17 49 IPR006594 GO:0005515
Ahy17g2078 807 MobiDBLite consensus disorder prediction 492 514 - -
Ahy17g2078 807 ProSiteProfiles Trp-Asp (WD) repeats profile. 568 600 IPR001680 GO:0005515
Ahy17g2078 807 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 775 807 - -
Ahy17g2078 807 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 12 446 IPR044716 GO:0003714
Ahy17g2078 807 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 526 561 - -
Ahy17g2078 807 ProSiteProfiles Trp-Asp (WD) repeats profile. 775 807 IPR001680 GO:0005515
Ahy17g2078 807 Gene3D - 525 659 IPR015943 GO:0005515
Ahy17g2078 807 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 470 807 IPR044716 GO:0003714
Ahy17g2078 807 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 12 446 - -
Ahy17g2078 807 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 568 600 - -
Ahy17g2078 807 PRINTS G protein beta WD-40 repeat signature 587 601 IPR020472 -
Ahy17g2078 807 PRINTS G protein beta WD-40 repeat signature 794 807 IPR020472 -
Ahy17g2078 807 PRINTS G protein beta WD-40 repeat signature 545 559 IPR020472 -
Ahy17g2078 807 CDD WD40 530 807 - -
Ahy17g2078 807 SMART WD40_4 768 807 IPR001680 GO:0005515
Ahy17g2078 807 SMART WD40_4 519 558 IPR001680 GO:0005515
Ahy17g2078 807 SMART WD40_4 604 644 IPR001680 GO:0005515
Ahy17g2078 807 SMART WD40_4 647 683 IPR001680 GO:0005515
Ahy17g2078 807 SMART WD40_4 727 766 IPR001680 GO:0005515
Ahy17g2078 807 SMART WD40_4 686 724 IPR001680 GO:0005515
Ahy17g2078 807 SMART WD40_4 561 600 IPR001680 GO:0005515
Ahy17g2078 807 Pfam WD domain, G-beta repeat 689 723 IPR001680 GO:0005515
Ahy17g2078 807 Pfam WD domain, G-beta repeat 531 558 IPR001680 GO:0005515
Ahy17g2078 807 Pfam WD domain, G-beta repeat 567 600 IPR001680 GO:0005515
Ahy17g2078 807 Pfam WD domain, G-beta repeat 771 807 IPR001680 GO:0005515
Ahy17g2078 807 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 470 807 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2078 Ahy-Chr17 93331679 93341525 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2078 544 792 U-box Gene Family AT2G33340 28.682 1.97e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Ahy17g2078 WD40 0.0062 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2078 - - qsu:111995984 1144.03