Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2064 ATGGAAACTGGGGATGGAAATAGCAATGCCGATAGCCCTGAACGTACGGCAGGGATGGAGGGGTGCTTGTATTCCGAAGCTGTAAATAATGGAGTGGTAATTGTTGATGGAAGTGGTGCTGATGAGAGCAAAGAAATTAGGCATTCGAAGAAGGAAGCTGTAAATACCAGAGTGTCAACTGCAGATGGGGGTTTTCGGACATACAAGAGGCGCAAACATGTAAAGATGAGTTGTTCAGAAAGCAAAGCTCAGGAAGAAAGCAGAGTGTGTGCGGAAGCCGCAAGTCACTTTTCAGAACAGGCTGTGAAGAAACCATATGGCAATGATAACAGTGGCACAAAGTGGTGCATAAAGGAAGCACTCATGAGTAATCCAAAATCCATTACCGACATGGAAACTTCTAAAATTGACAAAGATGGCCAAGAATGCTCTTCACACTTCGACTGTTCCTCTCATAGGTTACAGTTTGAAGCTAATGGGCATGCATATGTCATGCATGGTGGATGTTCAAGTGAATCAGATGGCAATGGTCTTACTAAGAAGTGTCAGCGTGTGTTCCATAATATCTTAGCCTCTGAAAAATTCAGTTCATTATGTAAGGTGCTCCTAGAAAATTTTCACGGAATGAAACCTGAAAGTGTATTTGACTTTAGTGTCATAAATTCAAGGATGACAGAAGAAGCTTATGAACAATCACCCACACTTTTCTTGTCAGATTTTCAACAGGTTTGGAGAAAGCTTGAAAACACTGCAAATGAGATTGTTGCTATAGCAAAGAGTCTTTCCAACTTGTCAAGAGCGTATTACTTTGAGCATGTGGGAGTTCCTGGACACGGTTCATTTGAGGATCAAAAACAAGTGTTCCATAACTATGCATTGGACAATGTTATGAGACCACAGCAGACAGAAGTTTGTGCTACAGATAAAGTCTGCAGTTGCAGGCATTGTGGAGGCAAGGCAGATGGGACAGACTCCTTGATTTGTGATTCATGTGAGGAGATGTACCATGTATCTTGTATTGTGCCGGCTTTGAAGGAATTACCTGAAAAAAGCTGGTTCTGTGCCAATTGTACTGCTATTGAAATAAGATCTCCACATGATAATTGTGTGGTGTGTGGAAGGTTGAATGCCCCAAAGTCCTTGAACAACATTGTTGGTGATGAGAGCATTCCTACAAATGATGAAACACACAATGAATTGGAGGAAAATTCAAATTGTACATATGATGGGATCGAGGTGTCCATAGGGAGAAGAAACTTGCCTGATTGCAAAATTTGTAGGGAGGAAGTAGATGGAGAAGATGTACGGATATGCGGTCACAATTCATGCCCTAGTAAATACTATCATGTAAGGTGTTTGTCCACTAAGCAGGTCCAGTCATATGCTCACTGTTGGTACTGCCCTTCTTGTTTATGTCGAGTTTGCCTCGTCGATCGAGATGATCACAAGATTGTTCTCTGTGATGGTTGCGACCATGGATACCACATCGATTGCATGGAGCCTAAACGGACTACCATTCCAAAAGGCAACTGGTTCTGCAGAAAATGCGATGCAGGGATCCAAGCAATACGCCGGGCTAAAAAGACATATGAGAATTTCAATTTTAGAACTGGCGAAGATGTTTCAAAACCTAAGTATAAGCTTGGCAAGAGATGGAAACAAGGACGAGAATTGGAGAAAGATGGAGGAATGGACATGCTTTTAACAGCAGCCAACACACTTAAATTTGAAGAGAACTTAGCTAGTAGCTAG 1752 0.4195 METGDGNSNADSPERTAGMEGCLYSEAVNNGVVIVDGSGADESKEIRHSKKEAVNTRVSTADGGFRTYKRRKHVKMSCSESKAQEESRVCAEAASHFSEQAVKKPYGNDNSGTKWCIKEALMSNPKSITDMETSKIDKDGQECSSHFDCSSHRLQFEANGHAYVMHGGCSSESDGNGLTKKCQRVFHNILASEKFSSLCKVLLENFHGMKPESVFDFSVINSRMTEEAYEQSPTLFLSDFQQVWRKLENTANEIVAIAKSLSNLSRAYYFEHVGVPGHGSFEDQKQVFHNYALDNVMRPQQTEVCATDKVCSCRHCGGKADGTDSLICDSCEEMYHVSCIVPALKELPEKSWFCANCTAIEIRSPHDNCVVCGRLNAPKSLNNIVGDESIPTNDETHNELEENSNCTYDGIEVSIGRRNLPDCKICREEVDGEDVRICGHNSCPSKYYHVRCLSTKQVQSYAHCWYCPSCLCRVCLVDRDDHKIVLCDGCDHGYHIDCMEPKRTTIPKGNWFCRKCDAGIQAIRRAKKTYENFNFRTGEDVSKPKYKLGKRWKQGRELEKDGGMDMLLTAANTLKFEENLASS* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2064 583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 416 474 IPR013083 -
Ahy17g2064 583 ProSiteProfiles Zinc finger PHD-type profile. 469 519 IPR019787 -
Ahy17g2064 583 ProSiteProfiles Zinc finger RING-type profile. 423 470 IPR001841 -
Ahy17g2064 583 PANTHER HISTONE ACETYLTRANSFERASE 99 578 - -
Ahy17g2064 583 Gene3D - 198 360 - -
Ahy17g2064 583 Pfam PHD-finger 472 517 IPR019787 -
Ahy17g2064 583 Pfam PHD-finger 313 358 IPR019787 -
Ahy17g2064 583 SUPERFAMILY FYVE/PHD zinc finger 303 359 IPR011011 -
Ahy17g2064 583 SMART PHD_3 472 517 IPR001965 -
Ahy17g2064 583 SMART PHD_3 422 471 IPR001965 -
Ahy17g2064 583 SMART PHD_3 312 358 IPR001965 -
Ahy17g2064 583 PANTHER D4, ISOFORM A 99 578 - -
Ahy17g2064 583 ProSiteProfiles Zinc finger PHD-type profile. 310 360 IPR019787 -
Ahy17g2064 583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 475 539 IPR013083 -
Ahy17g2064 583 SUPERFAMILY FYVE/PHD zinc finger 418 471 IPR011011 -
Ahy17g2064 583 SUPERFAMILY FYVE/PHD zinc finger 471 525 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2064 Ahy-Chr17 90079396 90089835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2064 471 538 C2H2 Transcription Factor Family AT3G01460 39.706 1.12e-11 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ahy17g2064 PHD 5.70E-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2064 - - gmx:100810450 709.909