Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1976 ATGGAGTCGGAGGAATCCCGGTCCCAGTTACCGGGAGACGAAGCAACAGCGGTTGAGGGAACCGCTGAGCAACTGGTGGCGAGGGCCATAGCTCCCATCAAGAAGGAATTCCTTCGCCCACCACCTGTTCGCTCTTCCTCCGCAGACAACGAAGCCGCTGCCGCCGCCGCCGCCACCAATGATAATAAGAACCCTGCTCATCCTGGTTCGGGTCTTCTAAAGGACAAGAAGTCCAAGCGCCAGCTCAAGCGTGAACGCCGTCAGGAGCAAAAGTCGGCACGAAACCTCTGCCCGGAAGTTGCAAAGACCGGTGATGTTACTTCATGTCCTTATAAAGACAAATGCCGCTTCAGCCATGATATTGAAGCCTTCAAGGCCCAGAAACCAGCTGATCTAGAAGGACAATGTCCTTTTGTTAAGTCTGGAGGGCCTTGCCCTTATGGGTTAGCATGTAGATTTTCAAGTACCCATGAAGATGGTGTTCCTTCTTCTACTGGCCATCTCAACGGTCTTAAGAACCCTTCTGAGGTTAATGGATTGAGCAAAGATGTTCAGAAGCTTCTGTGGAAAAATAAGATGAGGTTCTCCAAGGCTGATGCCAAACTCAAAAGTCTTGGCCTCTTGGGCCCCAAGTCAAAAATGAAGAACTTGGAAAATAAAGATGGTGAAAATGGCGGTTCAAATAAGTGTAGCCTTTCTGATGACAATGGGTGTTGTGAAGTAGCCTCTGACTTGGGTCCTAAGTTGGAAGAAGCTATAAAGGATGATGATGCTGATGCAAAATATGAAACCGATGAACTTTGTCCACAGAAAAGAAGAAAAACTGGAGTAAATTGTGATCCTAGTGAGATAGAAAAAGGTGTGAATGTTACTGAAGAAATTGAAAGAGGCAGCATAAATACTGAACCAGAAGCAGGATGTGATACTTTAACCATAAAAACTGATCTAAGTCTGAAGTTACATCCACGTGAAAAGAAGCTTATTGATTTTAGGGACAAATTGTATCTTGCACCCTTGACCACAGTTGGAAACCTCCCTTTTAGGAGGGTTTGCAAAGTATTAGGAGCTGATGTAACATGTGGTGAGATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCTTCTGAATGGGCATTGCTGAGACGTCATTCATCTGAAGATTTATTTGGTGTACAAATCTGTGGTGCATATCCAGATACTGTGGCTCGCACTGTTGAACTAATAGAACAAGAATGTACCATAGATTTTATTGATATAAATATGGGTTGCCCTATTGACATTGTTGTGAATAAGGGTGCTGGATCAGCTCTTCTGACAAAACCAATGCGGATGAAAAATATTGTTGAAGTAGCTTCAAGCACAGTGGACAAACCAATAACTATCAAGGTACGGACTGCTTATTTTGAAGGAAAGAATCGCATTGATTCTCTCATTGCAGACATGGGCTCTTGGGGAGCTGGCTCAGTAACAATACATGGAAGGTCACGTCAACAACGCTATAGCAAGCTTGCTGATTGGGATTACATATACCAGTGTGGAAGGAAGGCCCCTAAGACATTGCCAGTAGTGGGGAATGGGGATGTTTTTTCGTTTGTAGACTGGAATAACCACAGAACTGCATGTCCTGAACTTGCTACCTGCATGGTTGCTCGTGGTGCTCTGATTAAACCTTGGATATTTACTGAGATCAGGGAACAGAGACATTGGGACATCAGTTCTGGTGAGCGACTAAATATTCTCAAAGAGTTTGTGCATTTTGGCCTTGAACACTGGGGATCTGACACAAAAGGAGTGGAGACAACGAGGAGGTTCTTGTTGGAATGGCTTAGCTACACTTGTAGGTACGTACCTGTTGGTCTTCTGGAAGTGATTCCACAACGAATAAACTGGCGTCCACCTTCTTACTATGGGCGAGACGAGCTTGAGACGCTGATGGCCTCAGACTCGGCAGCTGACTGGATACGCATATCAGAGATGCTACTAGGCAAGGTTCCGGATGGCTTTACATTTGCTCCAAAGCATAAATCAAATGCTTACGATAGAGCCGAAAATGGCTGA 2058 0.4504 MESEESRSQLPGDEATAVEGTAEQLVARAIAPIKKEFLRPPPVRSSSADNEAAAAAAATNDNKNPAHPGSGLLKDKKSKRQLKRERRQEQKSARNLCPEVAKTGDVTSCPYKDKCRFSHDIEAFKAQKPADLEGQCPFVKSGGPCPYGLACRFSSTHEDGVPSSTGHLNGLKNPSEVNGLSKDVQKLLWKNKMRFSKADAKLKSLGLLGPKSKMKNLENKDGENGGSNKCSLSDDNGCCEVASDLGPKLEEAIKDDDADAKYETDELCPQKRRKTGVNCDPSEIEKGVNVTEEIERGSINTEPEAGCDTLTIKTDLSLKLHPREKKLIDFRDKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTVARTVELIEQECTIDFIDINMGCPIDIVVNKGAGSALLTKPMRMKNIVEVASSTVDKPITIKVRTAYFEGKNRIDSLIADMGSWGAGSVTIHGRSRQQRYSKLADWDYIYQCGRKAPKTLPVVGNGDVFSFVDWNNHRTACPELATCMVARGALIKPWIFTEIREQRHWDISSGERLNILKEFVHFGLEHWGSDTKGVETTRRFLLEWLSYTCRYVPVGLLEVIPQRINWRPPSYYGRDELETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDRAENG* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1976 685 ProSiteProfiles Zinc finger C3H1-type profile. 91 122 IPR000571 GO:0046872
Ahy17g1976 685 Gene3D Aldolase class I 329 571 IPR013785 -
Ahy17g1976 685 SUPERFAMILY FMN-linked oxidoreductases 333 646 - -
Ahy17g1976 685 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 25 685 - -
Ahy17g1976 685 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 25 685 - -
Ahy17g1976 685 MobiDBLite consensus disorder prediction 1 96 - -
Ahy17g1976 685 Pfam Dihydrouridine synthase (Dus) 336 572 IPR035587 -
Ahy17g1976 685 ProSitePatterns Uncharacterized protein family UPF0034 signature. 417 435 IPR018517 GO:0008033|GO:0017150|GO:0050660
Ahy17g1976 685 CDD DUS_like_FMN 333 568 IPR035587 -
Ahy17g1976 685 Gene3D - 86 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1976 Ahy-Chr17 71162929 71168207 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy17g1976 Dus 4.30E-49 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1976 K05544 - gmx:100783494 1083.55