Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1932 ATGAGCAACACTATAGTATGCCCTTCTGATCAATCAATCAAACATGGTCCAGAAAGTGAGTATTCTGATGAAGAAAGGAAGAAAAAGCTTGGTTCCGTGAAGAAGTTGGCAATTAGTGCCTCAAAAAACTATAGGAATTCCTTGAAGAAGGGACGGCGACACAGCAGGGTGATGTCGGTCTCTATCGAGGATGAACTTGATGCAGAAGAGATGAAGGCGGTCGACGCCTTTCGCCAAGTACTTGTTTTGGAAGAGCTCTTGCCCTCAATGCATGATGATCATCACACAATGCTAAGATTCTTGAGAGCAAGAAAGTTTGATGTGGAGAAAACAAAACAGATGTGGGCAGATATGCTTAAATGGAGGAAGGAATTTGGAGCAGACACTATCATGGAGAACTTTGAATTCAAAGAAATAGATGATGTTCTGAAATACTACCCACAAGGGCATCATGGAGTTGATAAGGATGGAAGACCTGTTTACATTGAAAGATTGGGTCAAGTTGATTCTACAAAATTGTTGCAAGTAACAACTATCGACCGTTATCTTAAGTACCATGTAAAAGAGTTTGAGAGGACCTTCAGAATTAAAATGCCAGCGTGCTCTATTGCTGCAAAAAAGCACATTGACCAAAGCACAACAATTTTGGATGTGCAAGGAGTGGGACTCAAAAGTCTGAACAAAGCTGCAAGGGATCTCATTCAGCGTCTTCAGAAGATTGATGGTGACAATTATCCTGAGTCCCTGAACCGTATGTTCATCATCAATGCTGGACCAGGATTTAGGCTCCTGTGGAATACCGTTAAGACATTCCTTGACCCCAAGACCACCTCAAAAATCCATGTGCTAGGTAACAAATACCAGAGCAAATTGCTTGAAATCATTGATGCCAGTGAACTTCCAGAGTTCTTGGGTGGCACTTGTACTTGTGCTGATAAAGGTGGTTGCATGCGTTCTGACAAGGGACCATGGAATGATCCAATGATCTTGCAGATGGTACAAAATGGCAAGGGCAGATACAATACAAGAACCTTATCTGGGATCAATGAGAAACCACTTTCAGAAAATGCGGTAACACAAGAGCAGGGATTCAAAGAATCTATCTTAAAGGGATGCCAAGAAGCTGTTCTTGTAGCTCCTACTGAACACGCTGCATACTCAAAAATAGTGGAATCTGAATACACTGCTTTTCCAGAAGCCTTAAAGCAATACAGTGTGTATAAGTATGAAGACCTTGATCCATCTTTGAAGAAGTTAGTAGACACTAATAAATATACACTTTCCACAGCTGAGAAAACTAAACTTACTAGTCAGTTAGTTGGTGGATTAATGGCCATTTTCATGAGTTTTATAACAATGGTCCGCTTCACGAGGAACATGCCAAGGAAAATCACAGAAGCAGCCCTATATGGTGGCGCAGTATACTATGATGGTGCTATGATGAGAGCCCCCAAAGTCTCAATTAACGATCACATGACCATGATGAAGCGCATGGCTGAACTAGAAGAAAAAATGAATGCTCTCAGCATAAGGCCAATCATGTCACCTGAAAAGGAGGAACTACTAAACAGTGCTGTAAGCAGAGTTAGTACTTTGGAACAAGATTTAGCTGCAACCAAAAAGGCACTTGATGAAGCCCTTGCTAAACAAATTGAGCTCCAATCCGAAATAGACAAGAAAAGGAAGAAGAAAAATAAGTTGAAGAAGTTGTTTTGCTACCGTGAGTGA 1728 0.4115 MSNTIVCPSDQSIKHGPESEYSDEERKKKLGSVKKLAISASKNYRNSLKKGRRHSRVMSVSIEDELDAEEMKAVDAFRQVLVLEELLPSMHDDHHTMLRFLRARKFDVEKTKQMWADMLKWRKEFGADTIMENFEFKEIDDVLKYYPQGHHGVDKDGRPVYIERLGQVDSTKLLQVTTIDRYLKYHVKEFERTFRIKMPACSIAAKKHIDQSTTILDVQGVGLKSLNKAARDLIQRLQKIDGDNYPESLNRMFIINAGPGFRLLWNTVKTFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCADKGGCMRSDKGPWNDPMILQMVQNGKGRYNTRTLSGINEKPLSENAVTQEQGFKESILKGCQEAVLVAPTEHAAYSKIVESEYTAFPEALKQYSVYKYEDLDPSLKKLVDTNKYTLSTAEKTKLTSQLVGGLMAIFMSFITMVRFTRNMPRKITEAALYGGAVYYDGAMMRAPKVSINDHMTMMKRMAELEEKMNALSIRPIMSPEKEELLNSAVSRVSTLEQDLAATKKALDEALAKQIELQSEIDKKRKKKNKLKKLFCYRE* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1932 575 PRINTS Cellular retinaldehyde-binding protein signature 298 307 - -
Ahy17g1932 575 PRINTS Cellular retinaldehyde-binding protein signature 265 284 - -
Ahy17g1932 575 PRINTS Cellular retinaldehyde-binding protein signature 96 118 - -
Ahy17g1932 575 CDD SEC14 139 307 IPR001251 -
Ahy17g1932 575 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 138 312 IPR001251 -
Ahy17g1932 575 Pfam CRAL/TRIO domain 144 306 IPR001251 -
Ahy17g1932 575 Coils Coil 223 243 - -
Ahy17g1932 575 SMART sec14_4 138 309 IPR001251 -
Ahy17g1932 575 Pfam CRAL/TRIO, N-terminal domain 84 117 IPR011074 -
Ahy17g1932 575 Gene3D - 126 337 IPR036865 -
Ahy17g1932 575 Gene3D - 27 125 - -
Ahy17g1932 575 SUPERFAMILY CRAL/TRIO N-terminal domain 64 133 IPR036273 -
Ahy17g1932 575 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 7 567 - -
Ahy17g1932 575 SUPERFAMILY CRAL/TRIO domain 138 335 IPR036865 -
Ahy17g1932 575 SMART CRAL_TRIO_N_2 93 118 IPR011074 -
Ahy17g1932 575 MobiDBLite consensus disorder prediction 1 27 - -
Ahy17g1932 575 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 7 567 - -
Ahy17g1932 575 Coils Coil 491 511 - -
Ahy17g1932 575 Coils Coil 529 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1932 Ahy-Chr17 64361706 64365931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1932 72 303 Acyl Lipid Metabolism Gene Families AT5G47730 28.631 2.99e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1932 - - gmx:100798374 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1932 17 64361706 64365931 Ahy8g0144 8 2701628 2705094 hybridization
Ahy16g0043 16 379571 381449 Ahy17g1932 17 64361706 64365931 PCT
Ahy6g1298 6 19605420 19607007 Ahy17g1932 17 64361706 64365931 PCT
Ahy17g1932 17 64361706 64365931 Ahy16g0044 16 383388 393072 PCT
Ahy17g1932 17 64361706 64365931 Ahy6g1295 6 19572683 19575102 PCT