Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1894 ATGTCTCACAACAATCACATAACCACCGATTCCCCGCTCTCTCGTCGCATAGTTCGTTCCTTCCTGCAATTCCTCAACTCTGTTGAACCAGGGCCTGGGGTTGATGCCGAAGGGATTGAGGTTGCTAGGGAGTGTTTGGCAGAGGCCTTTAAGCTAAACTGTGCTGGTGTAGATGGTGATCCGCAATCTGATTCCTTGATTGACATGTTCAAGAGCCTTGAAGCAAGAAAGCAGCGTGAAACTATCAAGTCAGACCCTAGTCCTATGGATGCTTCTAGTTCATTCTCTGACCATAATCCATCATCCTTTGCTCAAAATCATATGAAGGATCAAGATTGGACACAGGGCACTGACATTTTTGCATCCAAAGATGAACTCTGTGGAAAATTTTTTGCATCTCTGGAGAAAAATCACTATTTTAGGGTGAATCACGATGGAACTGATGACCCAATGCAACTAGAGAAAGCATCTTGTTTATTTGATAATGCTTTTAAGGAGATGGAAAAATCTGGGTCCCCAGTATTAAATCTGAAGAATTTGGCTGAATCACTGAAATCACTAGGTAACAAGGCAATGCAATCCAAGCAATACCATGATGCAATTGAGTTGTATAATTGTGCAATTGCAGTGCATGAAAAAAGTGCTGTTTATTACTGCAACAGGGCAGCAGCTTACACTCAGCTTAAAAAATATGATGAAGCAATCCAAGATTGTCTTAGATCTATTGAGATTGATCCAAACTACAGCAAGGCTTACAGTCGTTTGGGGTTAGTATACTATGCTCAAGGAAACTACAGCTTTGCTATTGATAAAGGGTTCAGAAAAGCCTTGCTATTGGATCCAAATAACGAAGCTGTTAAAGAAAATATACGGGTGGCTGAGCATAAATTGCGAGAAGAGCAACACCATGCAAATCATAATCAGAGTTCAAGATCATCTTGGGAATTCCCGAACCAATCGACAAGAGGATCAAGAAGCCATGGAGTGCCACCTTTTCCATCAGTGCCATTTAACCCAAATGATATAGCAAGCATGTTCAGAGACATGGCTGCAAATGTCACAGGTTCGCACCATGGGTCGCAGTCTCAGGAACGGCCAGTGGATGCCAATGCCACAAGTGCTAACGAACCGGAAATAAGAATTGGTGGCAATATTAATTTGAACTTTGATGAAATGTCTGATGATGTAACAGGAGCCTTTAGATCTATGATGGAGATGTTCTCTGGGAGCTCGTCTCAAGGGCAACGACAAGATCATATGAATGGAAGAGCAGCTCCAAACTAA 1284 0.4213 MSHNNHITTDSPLSRRIVRSFLQFLNSVEPGPGVDAEGIEVARECLAEAFKLNCAGVDGDPQSDSLIDMFKSLEARKQRETIKSDPSPMDASSSFSDHNPSSFAQNHMKDQDWTQGTDIFASKDELCGKFFASLEKNHYFRVNHDGTDDPMQLEKASCLFDNAFKEMEKSGSPVLNLKNLAESLKSLGNKAMQSKQYHDAIELYNCAIAVHEKSAVYYCNRAAAYTQLKKYDEAIQDCLRSIEIDPNYSKAYSRLGLVYYAQGNYSFAIDKGFRKALLLDPNNEAVKENIRVAEHKLREEQHHANHNQSSRSSWEFPNQSTRGSRSHGVPPFPSVPFNPNDIASMFRDMAANVTGSHHGSQSQERPVDANATSANEPEIRIGGNINLNFDEMSDDVTGAFRSMMEMFSGSSSQGQRQDHMNGRAAPN* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1894 427 PANTHER LD24721P 10 424 - -
Ahy17g1894 427 Coils Coil 283 303 - -
Ahy17g1894 427 SMART tpr_5 215 248 IPR019734 GO:0005515
Ahy17g1894 427 SMART tpr_5 181 214 IPR019734 GO:0005515
Ahy17g1894 427 SMART tpr_5 249 283 IPR019734 GO:0005515
Ahy17g1894 427 ProSiteProfiles TPR repeat profile. 181 214 IPR019734 GO:0005515
Ahy17g1894 427 MobiDBLite consensus disorder prediction 354 370 - -
Ahy17g1894 427 MobiDBLite consensus disorder prediction 300 336 - -
Ahy17g1894 427 MobiDBLite consensus disorder prediction 78 106 - -
Ahy17g1894 427 ProSiteProfiles TPR repeat profile. 249 283 IPR019734 GO:0005515
Ahy17g1894 427 MobiDBLite consensus disorder prediction 407 427 - -
Ahy17g1894 427 MobiDBLite consensus disorder prediction 85 106 - -
Ahy17g1894 427 MobiDBLite consensus disorder prediction 307 327 - -
Ahy17g1894 427 PANTHER LD24721P 10 424 - -
Ahy17g1894 427 Gene3D Tetratricopeptide repeat domain 176 334 IPR011990 GO:0005515
Ahy17g1894 427 MobiDBLite consensus disorder prediction 353 377 - -
Ahy17g1894 427 SUPERFAMILY TPR-like 180 294 IPR011990 GO:0005515
Ahy17g1894 427 Pfam Tetratricopeptide repeat 215 248 IPR001440 GO:0005515
Ahy17g1894 427 Gene3D Immunoglobulin FC, subunit C 1 76 - -
Ahy17g1894 427 ProSiteProfiles TPR repeat profile. 215 248 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1894 Ahy-Chr17 60087336 60098043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1894 180 316 U-box Gene Family AT3G07370 27.586 2.04e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1894 K16365 - gmx:100775346 567