Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1870 ATGTTTATGTCAGCCACAATGGATCAATACACACAACAGTTTCACTCGGATCCATTTCAAGGGGGTGAGTTAATGGAAGTACTTCAACCTTTTTATAGAAGTCTTTCTACAACAACCACCACCACCACAAGCACAATTACTTCATTACCCTCATCATCTAATTCCCATCTACCCTCAACTTCCACCACCTTGAATTCTTCTTCTTACTACAATCCTTCTATAAACTTCTATTCTTCTTCTCCACAGCCTGATTTCTACACTCAATATGGTTGCCCTTCAATGATGACCCCTTTGTTTCCTTCACGTTTATCAAACAGCCAGAATTTCATTGGCTTTGAGCAACCACCGTTTTCTTCTATTGGGCTCAACTATCAGATCCAGGCCCAATCACAAACACAACAGAGCAACACCCTAAGCTTCCTCAGCCCAAAGCCAATTCCCATGAAACAAGGCCCACCAAAGCCCACAAAACTCTACAGAGGCGTACGGCAAAGGCAATGGGGAAAATGGGTGTCTGAGATCAGACTCCCAAAGAACCGCACTCGGCTTTGGCTTGGAACTTTCGAGACTGCCGAGGAAGCTGCTTTGGCTTATGATAAAGCGGCTTTTAAGCTAAGAGGTGATTTCGCGAAGCTCAACTTCCCTAACCTTAAGCACCACGGTTCTTGCATCCTTGGCGGCGGTTTTGGGGAGTATAGGCCTCTTCATTCCGCTGTTGATGCCAAGTTGGATGCTATCTGTGAAAATCTCTCTCAGATTCGGAAACAAGGGAAGCAGGGAAAGAAGCCTGTGATGAGGTTAAAGTCAAAGTCAAAAGCAACAACTCCAAATGTAGAAGGAGATGATGATGGTTGTTTCAATGTTGAGAGTGAAGAAGCCTCTGCGGGGTCTTCTCCTTTGTCTGATCTTACGTTTGATGACGTCAGTGAGTCACAGTGGGATGCTCCTTCAGAACATTTTTATCTGCAGAAGTTCCCTTCTTATGAGATCAACTGGGATTCTCTATGA 1008 0.4454 MFMSATMDQYTQQFHSDPFQGGELMEVLQPFYRSLSTTTTTTTSTITSLPSSSNSHLPSTSTTLNSSSYYNPSINFYSSSPQPDFYTQYGCPSMMTPLFPSRLSNSQNFIGFEQPPFSSIGLNYQIQAQSQTQQSNTLSFLSPKPIPMKQGPPKPTKLYRGVRQRQWGKWVSEIRLPKNRTRLWLGTFETAEEAALAYDKAAFKLRGDFAKLNFPNLKHHGSCILGGGFGEYRPLHSAVDAKLDAICENLSQIRKQGKQGKKPVMRLKSKSKATTPNVEGDDDGCFNVESEEASAGSSPLSDLTFDDVSESQWDAPSEHFYLQKFPSYEINWDSL* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1870 335 PRINTS Ethylene responsive element binding protein signature 159 170 IPR001471 GO:0003700|GO:0006355
Ahy17g1870 335 PRINTS Ethylene responsive element binding protein signature 181 197 IPR001471 GO:0003700|GO:0006355
Ahy17g1870 335 MobiDBLite consensus disorder prediction 42 64 - -
Ahy17g1870 335 CDD AP2 157 217 IPR001471 GO:0003700|GO:0006355
Ahy17g1870 335 Pfam AP2 domain 159 207 IPR001471 GO:0003700|GO:0006355
Ahy17g1870 335 ProSiteProfiles AP2/ERF domain profile. 158 215 IPR001471 GO:0003700|GO:0006355
Ahy17g1870 335 MobiDBLite consensus disorder prediction 257 309 - -
Ahy17g1870 335 Gene3D AP2/ERF domain 158 216 IPR036955 GO:0003700|GO:0006355
Ahy17g1870 335 SUPERFAMILY DNA-binding domain 158 215 IPR016177 GO:0003677
Ahy17g1870 335 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 3 334 - -
Ahy17g1870 335 SMART rav1_2 158 221 IPR001471 GO:0003700|GO:0006355
Ahy17g1870 335 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 3 334 - -
Ahy17g1870 335 MobiDBLite consensus disorder prediction 136 158 - -
Ahy17g1870 335 MobiDBLite consensus disorder prediction 291 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1870 Ahy-Chr17 58226096 58227975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1870 3 335 AP2-EREBP Transcription Factor Family AT1G78080 45.232 3.82e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy17g1870 AP2 8.80E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1870 K09286 - gmx:732559 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1870 17 58226096 58227975 Ahy17g1870 17 58226096 58227975 ECH
Ahy17g1870 17 58226096 58227975 Ahy8g0643 8 12680544 12682454 hybridization
Ahy17g2936 17 129279516 129281405 Ahy17g1870 17 58226096 58227975 PCT
Ahy17g1870 17 58226096 58227975 Ahy17g2936 17 129279516 129281405 PCT