LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy17g1865	ATGCCATTGAATGGAGATGATAATGTGGGAATGCCTATCAAGTGTGGAAAAATTCAAGCTACAGTCAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAGTTGAAGGACAAGTTTATAGAATGGCATATTTTGCTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAACCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTTCCTTTTTCTGAGCTGCTGAACATGACCCAAGATTATGACTTTTTAGTTGATGTCATTGGTCTTTTAACTTCAGTCGGAGAAGAGAAAGAATATGCAAAAGAGGGGAAAATTGTGAAAATGATTGCATTGGAATTAACTTCAAAAGATCTTACAGTGCGATGCGCATTGTTTGGGGATTATGTTAATCAAGTAAATCATTTCCTTGCCTCTGGGTATGGGGAGCAGCCTGTTGTAGTCATTCAACTTGCAAAAGTCAAGTTCTTTAGGGGTCAAGTAGGTCTTCAAAATGTGATGTATGCCACTCAAATGTTATTTAATCCTGACATTCCTGAAGTTGTTGAATTCAGGCAAAGTATGATTGAGCAAGGTGTCAGTGGTACCCAGCCACTGTTTATTGCAAATGAGGGTAAAGTTCTCTCCTTGGAAGATGATTTCATGCGTTTAATTAGAAAATGCACTATTGAAGAGCTTCAAGATAACAATCAGGAGGGTTCTTTTATCATTTTTGGTGCAATCCAAGGTATTGTTGAGGATGGAGGTTGGTGGTATTCTGCTTGTGTGTGTGGAAAGGGTATCTATCCTCAAAATGGTGCCTATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTCACTCCAAGATTTAAAATTAAAGTAACAGTTGAAGATCATACTGGGGAGGGTATTTTCCTTCTCTTTGATCGTGAGGCTTCTTATTTGCTTAAGAAATCATGTGCTGACTTGTTTACTGAGGTTCAAAGAGATGCAAGTCTTATATGTGGGGATACTTATCCTCCCATACTCCAAGGGCTCATTGGAAAGAAGTTGCTGCTCAAGGTTGATACCAAAGGTGTCCCACATGATACATTTTATGGGACTTTCCGAGTTAGGAGAATTTGTGATGATTCTACCATTATTGCGATGTTTGAACTTCCCAATTATGATGCTGATGATGAGTCTACTCCAAAAAAGGAGCATGATTTACACAAATCTGTTCCTCGTGGAAAAGCGGATGTTGGTATTAAGAAGGAGTCTTCTAATAGTTTTATCAAAAGTGAGAAAGATGCTTGTGAGTGTTCTGGGATTTTGTGTAAATCTCCCGTTCTTATAGATTTTTTGGCTGAAAAACAGCCTGTTGTTTCCGGAGGGACTGAGTTTGTTGGCTTAATTGATGGTGAGCATGGAAAAGAAGATAAAACTCCCAGCAATGATACTGTTAGTGATGATCTTTCTGCTGAACTAGATATATTGCTTAGCTCAGCAGAAAAAGAAACTCAGGAGCTGTTGTCCGATGTTCTTGAAGCACCTTCACAAAATGGAGAAAAGCTTACCCATGAAAATCATGTTGTCACCTCCAAGAGTAAGAGGAATTTGAATCCTTAA	1644	0.382	MPLNGDDNVGMPIKCGKIQATVKKPLLNRFRDHIVEGQVYRMAYFAVVSNHGSYRATSHEFKLVFLHRTTVVAVDEDVIPKTCFNMFPFSELLNMTQDYDFLVDVIGLLTSVGEEKEYAKEGKIVKMIALELTSKDLTVRCALFGDYVNQVNHFLASGYGEQPVVVIQLAKVKFFRGQVGLQNVMYATQMLFNPDIPEVVEFRQSMIEQGVSGTQPLFIANEGKVLSLEDDFMRLIRKCTIEELQDNNQEGSFIIFGAIQGIVEDGGWWYSACVCGKGIYPQNGAYYCDFCLKHITNVTPRFKIKVTVEDHTGEGIFLLFDREASYLLKKSCADLFTEVQRDASLICGDTYPPILQGLIGKKLLLKVDTKGVPHDTFYGTFRVRRICDDSTIIAMFELPNYDADDESTPKKEHDLHKSVPRGKADVGIKKESSNSFIKSEKDACECSGILCKSPVLIDFLAEKQPVVSGGTEFVGLIDGEHGKEDKTPSNDTVSDDLSAELDILLSSAEKETQELLSDVLEAPSQNGEKLTHENHVVTSKSKRNLNP*	548

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy17g1865	547	Pfam	Domain of unknown function DUF223	16	98	IPR003871	-
	Ahy17g1865	547	SUPERFAMILY	Nucleic acid-binding proteins	239	389	IPR012340	-
	Ahy17g1865	547	Gene3D	-	78	214	IPR012340	-
	Ahy17g1865	547	Pfam	Replication factor-A C terminal domain	257	340	IPR013955	-
	Ahy17g1865	547	Gene3D	-	6	76	IPR012340	-
	Ahy17g1865	547	PANTHER	REPLICATION FACTOR A 1, RFA1	35	336	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Ahy17g1865	547	PANTHER	ANIMAL RPA1 DOMAIN PROTEIN	35	336	-	-
	Ahy17g1865	547	CDD	RPA1_DBD_C	241	384	IPR013955	-
	Ahy17g1865	547	CDD	RPA1_DBD_B_like	104	207	-	-
	Ahy17g1865	547	CDD	RPA1_DBD_A_like	14	71	-	-
	Ahy17g1865	547	MobiDBLite	consensus disorder prediction	405	424	-	-
	Ahy17g1865	547	SUPERFAMILY	Nucleic acid-binding proteins	16	76	IPR012340	-
	Ahy17g1865	547	MobiDBLite	consensus disorder prediction	522	547	-	-
	Ahy17g1865	547	Gene3D	-	227	394	IPR012340	-
	Ahy17g1865	547	SUPERFAMILY	Nucleic acid-binding proteins	84	206	IPR012340	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy17g1865	Ahy-Chr17	57783371	57790885	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy17g1865	17	335	Core DNA Replication Machinery Family	AT5G08020	23.977	2.29e-16	80.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy17g1865	-		-	adu:107471135	1016.91