Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1830 ATGGCGGCGACAACAACCAAAAACATATTGAAAGAAACGGTGCAGCGATATGAAGAAGACGCAAGCGACGATAAGAGCTTCGAGGAGCTCGGTGTGGACGCTCGTCTCATTCGTGCCTTGCTCAAGAAAGGAATCGACAAGCCCACACCAATTCAGAGAGTCGCTATTCCACTCATTCTGGAAGGTAAGGATGTGGTTGCTCGTGCGAAGACAGGTTCTGGGAAGACGTTTGCTTACCTTCTCCCCATGCTACAGAAACTATTCGCTAATGTTGATCACAAGAAGCAGGCACCCAATGCTTTTGTTCTTGTTCCGACTCGCGAGCTGTGTCAACAGGTCTACACAGAGGTTGTGTCACTCATTGAGTTATGCCGAGTTCAACTGAAAGTCGCCCAATTGAATAGCAATATGCAAGCTTCTGATCTGCGTGCAGCTCTGACTGGACCTCCTGATATTTTGATATCCACACCTGCTTGCCTAGCAAAGTGCTTGTTTGATGGTGTACTTCAACCAGCTTCCATTAATGCTACGCTTGAAACTCTAATTCTTGATGAGGCAGATCTTCTATTATCATATGGATATGAAAATGATATAAAATCTTTTACGCCTCATGTACCCAGAAGTTGCCAGTGTCTTCTTATGTCCGCAACATCAAGTACTGATGTTGACAAACTAAAGAAGTTGATTCTACACAATCCATTCATTTTGACTTTGCCTGAAGTGGGAAATAATAAGGATGACGTCATCCCAAAAAATGTTCAGCAGTTCTGGATCTTGTGCCCTGCCAATGATAAATTGCTCTACACCCTTGCTGTTTTGAAGTTGGAGTTAGTGCAAAAGAAAGTTCTGATATTCACTAATGACATAGACATGAGTTTCAGATTGAAATTGTTCCTAGAAAAGTTTGGGATTAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAGAATTCCCGACTTCATATTCTTGAGGAGTTCAATGCTGGTCTGTTTGATTATCTTATTGCAACTGATGTCAGTCAGTCGAAGGAGAAGGATGAAGCACCTAAAGAAGGCAAAGGATCACGAAAGTCTAGGAAACATAAACTTAAACTCGATTCTGAATTTGGAGTAGTAAGGGGAATTGATTTCAAAAATGTATTCACGGTTATAAACTTTGATATGCCTCAAAGTGTTGCAGGATATGTACATCGAATTGGACGTACAGGAAGAGCATATAGTTCTGGTGCTTCTATTTCTCTGGTTTCAACAGATGAGATGGAAACATTGGAAGAAGTAAAAGCTTTTGTTGGTGATGATGAAAACAAGGGCTCAAACACAATTGTGGAGTTTCCTTTCCTCACCAAGAATGCAGTTGAATCTTTGCGGTATAGGGCTGAGGACATTGGGAAGAGCGTAACTAAAATTGCTGTGCGAGAATCACGTGCTCAGGATTTGCGGAATGAAATTCTAAACTCTGAAAAGTTGAAGGCCCACTTTGAAAGTAATCCAAGAGACTTAGATCTGTTGAAACATGACAAAGTTTTAAGCAAGAATGCACCTCCTTCGCACCTGCGTGATGTGCCTAACTACCTATTAGACAAGACCACCCAGGAGGCAAGGAAAATGGTCAAGCTTGCAAGTGATGCAATGGGAAATAATAATCATCGCAAGGGATTCAAGAAAAAACCAAAAACAGGTGGAGACCCTCTGAAGGCTATCTCTGCTGCGGTATCAAAAAGATCGCACAAAGGTGGAAGCCACAACAATAGCGGTGGTAGACATAAGCACAAAAGACTGACTGATTTATTCTAG 1791 0.4188 MAATTTKNILKETVQRYEEDASDDKSFEELGVDARLIRALLKKGIDKPTPIQRVAIPLILEGKDVVARAKTGSGKTFAYLLPMLQKLFANVDHKKQAPNAFVLVPTRELCQQVYTEVVSLIELCRVQLKVAQLNSNMQASDLRAALTGPPDILISTPACLAKCLFDGVLQPASINATLETLILDEADLLLSYGYENDIKSFTPHVPRSCQCLLMSATSSTDVDKLKKLILHNPFILTLPEVGNNKDDVIPKNVQQFWILCPANDKLLYTLAVLKLELVQKKVLIFTNDIDMSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDVSQSKEKDEAPKEGKGSRKSRKHKLKLDSEFGVVRGIDFKNVFTVINFDMPQSVAGYVHRIGRTGRAYSSGASISLVSTDEMETLEEVKAFVGDDENKGSNTIVEFPFLTKNAVESLRYRAEDIGKSVTKIAVRESRAQDLRNEILNSEKLKAHFESNPRDLDLLKHDKVLSKNAPPSHLRDVPNYLLDKTTQEARKMVKLASDAMGNNNHRKGFKKKPKTGGDPLKAISAAVSKRSHKGGSHNNSGGRHKHKRLTDLF* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1830 596 PANTHER ATP-DEPENDENT RNA HELICASE DDX56-RELATED 21 541 - -
Ahy17g1830 596 SMART helicmild6 293 405 IPR001650 -
Ahy17g1830 596 Pfam DEAD/DEAH box helicase 49 225 IPR011545 GO:0003676|GO:0005524
Ahy17g1830 596 CDD DEADc_DDX56 32 238 - -
Ahy17g1830 596 Pfam Helicase conserved C-terminal domain 264 405 IPR001650 -
Ahy17g1830 596 SMART ultradead3 44 256 IPR014001 -
Ahy17g1830 596 CDD SF2_C_DEAD 253 414 - -
Ahy17g1830 596 Gene3D - 241 443 IPR027417 -
Ahy17g1830 596 PANTHER RNA HELICASE 21 541 - -
Ahy17g1830 596 MobiDBLite consensus disorder prediction 542 596 - -
Ahy17g1830 596 Gene3D - 2 238 IPR027417 -
Ahy17g1830 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 237 IPR027417 -
Ahy17g1830 596 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 269 451 IPR001650 -
Ahy17g1830 596 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 25 53 IPR014014 GO:0003724
Ahy17g1830 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 428 IPR027417 -
Ahy17g1830 596 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 236 IPR014001 -
Ahy17g1830 596 Coils Coil 475 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1830 Ahy-Chr17 50231640 50240201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1830 26 428 Eukaryotic Initiation Factors Gene Family AT3G19760 26.303 2.79e-37 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1830 K14810 - gmx:100800749 935.636