Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1793 ATGACCCAAAACGGCAGTCTTGTCGAACACTATTACATGATCAGTTTCCTCCTCTTTGCCCTTCTCATGCAGAAGCCGCCAGAAGCAACATCTCAGCTGATAACTGCCGCAAAAACCCCAACATATTTGTCTCAAACATCCCCAATAGAACCACCCAACAAAAATTCCATGGTGGCCATCATGATCATCATCGTCTTTATGTTCCTCCTGTCAGCCTTCATCTCGCTCTACTCGCGCCACTGCACCCGTCGCCCAGCCCGCGTACAGTCTCGCAGGCTGAACATCGCCATGGTAGCCGACGAACTTAACGATCGCCAATCCCACAGCGAGTGTGTTGGCCTCAGCCAAGAGACAATCGAAACATTCCCTACTTTTCTCTACTCCTCCGTGAAGGGTCACAAGATCGGCACGTGCGCATTGGCATGCGCGGTGTGCATAAGCGAGTTCGAGGACCAAGAGACCCTTCGCTTGATCCCCAAATGCAGCCACGTATTTCACCCAACCTGCATCGACGCCTGGCTCGCATCTCACTCCACGTGTCCCGTTTGCCGCGCCGACCTCGATCCAACGCAAAACGACGTCCATTCATCTTCCATATTCTCAATTCACATTCCTGATGATGACGTCATCAACGAAATGGAGGAGCAGGGCCAAAGCAACGAACAAGAGGACGCTGCTGCTGATGCTAGGGGCAGGGATCAAAACGACATCGTCGAATCGTTTTCATCGAAAGGTGATTTGCTACGTAGAAGCCGTACGGTGAACGATGTTATGACAGGCCAAACCCTGCGTTCTTTATTGTTTCCGCGGTCTAACTCGGCCGGAACATCCTTAACCAGGGTTCAGACCGGTGATAAGGATTTTGAAAGGTTTACTCTGAGGTTACCGAGTGGGGTTCGAAGCGAGGTTTTCATGAACTCGAGATTGAAGCGTGCAAAGACTTGTGTGGGGTTAGTGAGAATGAGTAGTGGGACAAAGGGGTATAGGACAGGAAGCGTTGGCAACTGCCGCGGCGATTACGAGCGGTGGCGGTTTACTTTGACACCGCCGTTTTTGACCAAGAATTGGAGTCGGTTAGGGAGAAGATCTGCATCGGCTCAGTGTTTAGGAGTGGAGGTGGATAATAATAATGTTGGTGAGCGACCTTCTGATCTCTTGTTCCCTCCATCGACAGCTTAA 1179 0.5106 MTQNGSLVEHYYMISFLLFALLMQKPPEATSQLITAAKTPTYLSQTSPIEPPNKNSMVAIMIIIVFMFLLSAFISLYSRHCTRRPARVQSRRLNIAMVADELNDRQSHSECVGLSQETIETFPTFLYSSVKGHKIGTCALACAVCISEFEDQETLRLIPKCSHVFHPTCIDAWLASHSTCPVCRADLDPTQNDVHSSSIFSIHIPDDDVINEMEEQGQSNEQEDAAADARGRDQNDIVESFSSKGDLLRRSRTVNDVMTGQTLRSLLFPRSNSAGTSLTRVQTGDKDFERFTLRLPSGVRSEVFMNSRLKRAKTCVGLVRMSSGTKGYRTGSVGNCRGDYERWRFTLTPPFLTKNWSRLGRRSASAQCLGVEVDNNNVGERPSDLLFPPSTA* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1793 392 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Ahy17g1793 392 SUPERFAMILY RING/U-box 136 193 - -
Ahy17g1793 392 MobiDBLite consensus disorder prediction 214 234 - -
Ahy17g1793 392 CDD RING-H2_PA-TM-RING 142 184 - -
Ahy17g1793 392 SMART ring_2 142 183 IPR001841 -
Ahy17g1793 392 Pfam Ring finger domain 141 184 IPR001841 -
Ahy17g1793 392 PANTHER RING FINGER DOMAIN-CONTAINING 12 323 - -
Ahy17g1793 392 PANTHER RING-H2 FINGER PROTEIN ATL11 12 323 - -
Ahy17g1793 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 190 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1793 Ahy-Chr17 46344747 46346288 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1793 33 355 Rapid Response to Elicitors AT3G05200 32.353 1.91e-45 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1793 K10664 - gmx:100814384 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1793 17 46344747 46346288 Ahy7g1698 7 61501897 61503657 hybridization
Ahy17g1793 17 46344747 46346288 Ahy8g0694 8 13631931 13634119 hybridization
Ahy17g2989 17 130332608 130334867 Ahy17g1793 17 46344747 46346288 PCT
Ahy7g1699 7 61553609 61555422 Ahy17g1793 17 46344747 46346288 PCT
Ahy17g1793 17 46344747 46346288 Ahy17g2989 17 130332608 130334867 PCT
Ahy17g1793 17 46344747 46346288 Ahy7g1699 7 61553609 61555422 PCT