Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1789 ATGACCGACCTGATCGAGTGTCATCCACCTTTAAGATGCCATCAAACTAACCACCACCGCGTCCTCTGTCTTTTTCTATCTAAACTATCACTACATGTCATCGTAACTAATAATCTGTTTGTTCAAGATGTTGGATCCTATCCACCTCATTTTCTTTTTCTTTTTCTCCTTATCTTTCACACTCCGCTTGCAACGGCACAGCAGCAGGAGTACCCATTGCCTAAGGTAAGAGGTGACAAGACCATGGTCATTGTCCTCCTCGTCCTCGTGGCCGTCTTCTTCGCCCTAGGCCTCCTCTCCATCTATATTCGCCAATGCTCCGAACGTCGGCACCGTGACCAGCTCCACCCTGCTATCCTCTCTGCCACCTACGGTGGAGGCAACAGCGGGGGGCAGCATCATGGCCTTGACATTGCGGTGGTGGACTCATTTCCAACCTTCATCTACTCCAACGTGAAGAGTCACAAGATTGGGCAGGGGGCGCTAGAATGCGCCGTGTGCCTCTGCGAGTTTCAAGATGAAGAAACGCTGCGTTTGATCCCACAATGCTGCCACGTGTTCCACTCCGACTGCATCGATGTCTGGTTCTCCTCCCACTCAACATGTCCAGTCTGCCGTGCAAATCTCACGCCAAAACCACCTCACACGTCATCACCACAATCCCTCGTTGTAAACATTTCGGATCAACCTGATACGAATCCAGTTAACAGTGAGCCAAATATCATTTCCCTGATCAATGATGGCGACCAGAACAATGCAATAATAACAGAGCCGAAGTCTCACCAGGAGAGGAGAACTATTTTTAATTTGGATGAAGAGAATGGTTCGGTTCAGTCATTTTATCGTTTTAACTCGGCCGGTCATTTTACGGTTCGACCGGTGGAGAACTTTGAGCGGTTCACATTGAGGCTACCGGAAGATATGAGAGACCGGCTCGTGAATGTTAGTTCAGTTAACCGAACGGTTAGTTGCAGGGTAACATTTCAAAGGGAGAGAAGCCACAAGGAGGGTTATAGGACAAGGAGTGCAAGAAGCACAGAGCCACCTTTTATTGGCATGACCAGATTTGAAAGGTTAGAGAAGGGTGAGAGCATTAAAGGAAATGAGGTTAAAGTAGATGGGGGAGAACGGTCTTTTGATCTTCTATTTCCCAAGGGCTCAAGGGATGAGAATTAG 1176 0.4813 MTDLIECHPPLRCHQTNHHRVLCLFLSKLSLHVIVTNNLFVQDVGSYPPHFLFLFLLIFHTPLATAQQQEYPLPKVRGDKTMVIVLLVLVAVFFALGLLSIYIRQCSERRHRDQLHPAILSATYGGGNSGGQHHGLDIAVVDSFPTFIYSNVKSHKIGQGALECAVCLCEFQDEETLRLIPQCCHVFHSDCIDVWFSSHSTCPVCRANLTPKPPHTSSPQSLVVNISDQPDTNPVNSEPNIISLINDGDQNNAIITEPKSHQERRTIFNLDEENGSVQSFYRFNSAGHFTVRPVENFERFTLRLPEDMRDRLVNVSSVNRTVSCRVTFQRERSHKEGYRTRSARSTEPPFIGMTRFERLEKGESIKGNEVKVDGGERSFDLLFPKGSRDEN* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1789 391 ProSiteProfiles Zinc finger RING-type profile. 164 206 IPR001841 -
Ahy17g1789 391 SUPERFAMILY RING/U-box 148 217 - -
Ahy17g1789 391 PANTHER RING-H2 FINGER PROTEIN ATL11 52 328 - -
Ahy17g1789 391 PANTHER RING FINGER DOMAIN-CONTAINING 52 328 - -
Ahy17g1789 391 CDD RING-H2_PA-TM-RING 163 206 - -
Ahy17g1789 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 212 IPR013083 -
Ahy17g1789 391 Pfam Ring finger domain 163 206 IPR001841 -
Ahy17g1789 391 SMART ring_2 164 205 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1789 Ahy-Chr17 46256783 46258362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1789 53 378 Rapid Response to Elicitors AT3G05200 35.227 1.87e-53 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1789 K10664 - gmx:100815982 283.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1789 17 46256783 46258362 Ahy17g1789 17 46256783 46258362 ECH