Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1733 ATGTTCTCGAAGCTTCATCAACAGCAGCACACCTTCCAACTCTCCCGAGAATGCCAAACCTCAGAAGACGATGACAGCAGGAGCAGCGGTGGGCCCACTCTCGGCCCGGGCCAAAAGCCAAACGCAACAGACGACGCCACTATCGAAGTCATTAGGCGTCCCAGGGGCCGTCCACCTGGCTCCAAAAACAAGCCCAAGCCTCCTCTCGTAATAACACGGGAGCCCGAGCCCGCCATGAGCCCATACATTCTCGAAATCCCCAGTGGAAACGACGTCGTTGAATCTATAGCTAGCTTCACACGACGCAAGAACTCAGGCCTCTGCATCCTCTCCGGTTCTGGAACCGTTTCCAACGTCACTCTCCGTCAACCGTCCAACGCCACCTCCCCCGGCGCCACTGTTACGTTCCACGGCCGCTTCGAAATACTCTCGATCTCCGCTACTTTTGTCCCTCACGCGCCGCCGCCTCCGGTTCCAAGTTCGTTCTCCATCTCTCTAGCCGGACCTCAGGGCCAGATCGTCGGCGGACTCGTCGCCGGCAAGCTGATCGCCGCCGGGATGGTGTACGTGGTTGCGGCGTCGTTCAGCAAAGCGGCGTACCACAGGCTGCAATCGTCGGAGGAAGAGGTCGCTGGTGGAGGTGGAGGAGGAGAGGTGCAGTCACCGCCGGTTTCTGCTGCGACGGAGAGCGGGAGTGGTGGCGGCGGCGGAGGGGGACACGTGGCGGTTGGAGATCAGTCCTGTGGAGTTGGAATCATGTACAGCGGTCACCTTCCTTCCGATGTGATTTGGGCTCCAACGGCAAGACCACCATTTTGA 819 0.5983 MFSKLHQQQHTFQLSRECQTSEDDDSRSSGGPTLGPGQKPNATDDATIEVIRRPRGRPPGSKNKPKPPLVITREPEPAMSPYILEIPSGNDVVESIASFTRRKNSGLCILSGSGTVSNVTLRQPSNATSPGATVTFHGRFEILSISATFVPHAPPPPVPSSFSISLAGPQGQIVGGLVAGKLIAAGMVYVVAASFSKAAYHRLQSSEEEVAGGGGGGEVQSPPVSAATESGSGGGGGGGHVAVGDQSCGVGIMYSGHLPSDVIWAPTARPPF* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1733 272 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 270 IPR014476 GO:0003680
Ahy17g1733 272 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 7 270 - -
Ahy17g1733 272 CDD DUF296 81 195 IPR005175 -
Ahy17g1733 272 SUPERFAMILY AF0104/ALDC/Ptd012-like 78 209 - -
Ahy17g1733 272 Pfam Plants and Prokaryotes Conserved (PCC) domain 81 196 IPR005175 -
Ahy17g1733 272 MobiDBLite consensus disorder prediction 1 16 - -
Ahy17g1733 272 PIRSF ESCAROLA 1 272 IPR014476 GO:0003680
Ahy17g1733 272 ProSiteProfiles PPC domain profile profile. 76 217 IPR005175 -
Ahy17g1733 272 MobiDBLite consensus disorder prediction 1 75 - -
Ahy17g1733 272 MobiDBLite consensus disorder prediction 208 240 - -
Ahy17g1733 272 Gene3D - 81 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1733 Ahy-Chr17 42054236 42055715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1733 44 271 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 62.128 1.83e-90 268
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1733 17 42054236 42055715 Ahy17g1733 17 42054236 42055715 ECH
Ahy17g1733 17 42054236 42055715 Ahy8g0728 8 14328765 14330593 hybridization