LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy17g1722	ATGGTGAGGCAGAAGATCAAGATAAAGATGATAGACAACATAACAGCAAGACAAGTAACGTTTTCAAAGAGGAGAAGAGGGATCTTCAAGAAAGCACAAGAGCTTTCTGTGCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCTGCCACTGGGAGGCTCTTTGAATATGCTAGCTCCAGGCAGATGAAAGGTGAAGATTTTCAAGGGCTGAACCTACAAGACTTACTACAACTGGAGAAAGCACTTCAAACAGGATTAAATCGCGTGATTGAGACAAAGGAAAAGCGGATCATGGATGACATCGCAGCACTTCAGAAAAAGGGCGCCGAATTGGAACAAGAGAACAAGAAGTTAAAGCAAAAGATGGATATGGTGAAGATGGGAAAAAGTCCATTAGTGATGGATTCATCGGATATTGGCATGCAAGAAGTGGTGTCATCCGAGTCACTAAATAATGCATGCAGCTGCATCAGTAGTGCCGCTCCTTCTTCTCTTGAAGATGATTCCTCTGACACTTCTCTTAAGTTAGGGTTGCCCTTTCCTAATAATTGA	555	0.4252	MVRQKIKIKMIDNITARQVTFSKRRRGIFKKAQELSVLCDAEVALIIFSATGRLFEYASSRQMKGEDFQGLNLQDLLQLEKALQTGLNRVIETKEKRIMDDIAALQKKGAELEQENKKLKQKMDMVKMGKSPLVMDSSDIGMQEVVSSESLNNACSCISSAAPSSLEDDSSDTSLKLGLPFPNN*	185

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy17g1722	184	Gene3D	-	13	75	IPR036879	GO:0003677\|GO:0046983
	Ahy17g1722	184	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Ahy17g1722	184	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Ahy17g1722	184	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Ahy17g1722	184	PANTHER	MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1	1	61	-	-
	Ahy17g1722	184	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Ahy17g1722	184	Pfam	K-box region	58	123	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Ahy17g1722	184	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Ahy17g1722	184	CDD	MADS_MEF2_like	3	60	IPR033896	GO:0000977\|GO:0045944
	Ahy17g1722	184	SUPERFAMILY	SRF-like	3	64	IPR036879	GO:0003677\|GO:0046983
	Ahy17g1722	184	PANTHER	MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1	61	177	-	-
	Ahy17g1722	184	Coils	Coil	95	125	-	-
	Ahy17g1722	184	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	11	57	IPR002100	GO:0003677\|GO:0046983
	Ahy17g1722	184	ProSiteProfiles	K-box domain profile.	37	129	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Ahy17g1722	184	MobiDBLite	consensus disorder prediction	161	184	-	-
	Ahy17g1722	184	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	61	177	-	-
	Ahy17g1722	184	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	61	-	-
	Ahy17g1722	184	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy17g1722	Ahy-Chr17	40705605	40716865	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy17g1722	1	181	MADS-box Gene Family	AT2G22540	43.775	5.63e-57	177

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Ahy17g1722		K-box	1.30E-14	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy17g1722	-		-	tcc:18591803	201.445

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy17g1722	17	40705605	40716865	Ahy17g1722	17	40705605	40716865	ECH