Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1719 ATGCCAACAACAGAAATAATAATTAGAAAAACCATTAGCTTCACTCTTGCACATGACATGGGTGGTACCCTTTCATTCAATCCAATATTCAACCTCACATTTTCCTTTTTCCTCGTCACGGTTACCACCACCTTTACCCTCATTGGCCCCTTCATTGTTGCCGACGCCGACGACGATTCTAGAGAATCTCCCCCTTCATTCCCCAGTTTCCAAAACTCAACGAATAGGGTACCATCCACCAACGGCATATCGACAAGAAACTCCAACCATTTGAACAGAAAATCAGAGCCATTAAAGCCAAGCACGATTATCGTGGTTGGTGTCTTAACCACCTTGTTCTCTCTTACATTTATTTTCCTTCTTTACATCAAGCATTGCATCCATAGGAATAACGAAAACCAATCCCATCAAGAAGGTGAGCCACTGCAGAGAAATGACTCTGGCATTGATCGTGGTGTTGTGGAAAAGCTACCGATTTTTCGATTTGGATCGCTAAGAGGACAAAAAGAAGGGTTAGATTGTGCAGTTTGCTTGAACAGGTTCGAGCACACAGATGTTCTTCGTTTGCTTCCAAAGTGCAATCATGCTTTCCATGTAGATTGTGTAGACAAGTGGTTCGATGCGCATTCAACTTGCCCTCTTTGTCGCAATAGGGTGGAGCTTAAAGACATCGTCCCGAGGGAACAATTACAAGAACAAGGAGAAAGAGATGAATTAGTGGAGGATATTGAGAGAGGAACCTTTCGGAGAGTCTCGGGGAGGCACTCCTCGGTGTTGGGGGAAAGAGAAGGTGGCTTCTTGGAGATTATTACACATAATTCAAATGAGAAAAAGAATAAAAAAATGAAGTCTTCTAGTAGCACCAGGTCATTTCACACTTCTTCTAGAAGCTTCGGAGGCTTTGTTCGCCCAAGAAAGGACAAAACGTTAATGGCAAGGCAAGAAGGTAATTTTAGTAATAATAACAACATAGGTAGTAATGCAGAGCACCATAGGTTGCAGCACCAAATTATTATTGATTCACCAGTGGCCTCTTTCGTTAAATCTAACGGTAAAGGAGAGTCATCATCATCACATCCTCATCATAGATGGAGTGAAGTTCCACAATCGGATCTTTTGTACTTGACTTCTGAGATGATAATCAATGATGCTGCTTCTTCTGTACCTGGGGAAAGAAGAGCAACTCATAACCACATCGTTAGCAATGAGAATAAGAATAATGGCGGTTTGAAGAATTTGAGGAGTTTTTCAGAGGTTACGGGAATGAGTAGGTTCTTAGGAGGGAGCAAAGGAAGAGAACATGGCAATCACGAAGAGCAAGATAAGCAACACTGTGTGGGGGTTGCTACAAGGTGGTCAGCTTGGAGCTCAAGGTCACAACGACCGCAAGCAAATGTTCAGTCGGGATCATAG 1413 0.4282 MPTTEIIIRKTISFTLAHDMGGTLSFNPIFNLTFSFFLVTVTTTFTLIGPFIVADADDDSRESPPSFPSFQNSTNRVPSTNGISTRNSNHLNRKSEPLKPSTIIVVGVLTTLFSLTFIFLLYIKHCIHRNNENQSHQEGEPLQRNDSGIDRGVVEKLPIFRFGSLRGQKEGLDCAVCLNRFEHTDVLRLLPKCNHAFHVDCVDKWFDAHSTCPLCRNRVELKDIVPREQLQEQGERDELVEDIERGTFRRVSGRHSSVLGEREGGFLEIITHNSNEKKNKKMKSSSSTRSFHTSSRSFGGFVRPRKDKTLMARQEGNFSNNNNIGSNAEHHRLQHQIIIDSPVASFVKSNGKGESSSSHPHHRWSEVPQSDLLYLTSEMIINDAASSVPGERRATHNHIVSNENKNNGGLKNLRSFSEVTGMSRFLGGSKGREHGNHEEQDKQHCVGVATRWSAWSSRSQRPQANVQSGS* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1719 470 SMART ring_2 174 215 IPR001841 -
Ahy17g1719 470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 224 IPR013083 -
Ahy17g1719 470 PANTHER RING-H2 FINGER PROTEIN ATL43 80 461 - -
Ahy17g1719 470 MobiDBLite consensus disorder prediction 59 94 - -
Ahy17g1719 470 CDD RING-H2_PA-TM-RING 173 216 - -
Ahy17g1719 470 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 80 461 - -
Ahy17g1719 470 Pfam Ring finger domain 173 216 IPR001841 -
Ahy17g1719 470 SUPERFAMILY RING/U-box 153 222 - -
Ahy17g1719 470 MobiDBLite consensus disorder prediction 64 94 - -
Ahy17g1719 470 MobiDBLite consensus disorder prediction 275 299 - -
Ahy17g1719 470 ProSiteProfiles Zinc finger RING-type profile. 174 216 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1719 Ahy-Chr17 40591839 40593433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1719 98 459 C3H Transcription Factor Family AT5G05810 37.845 5.79e-55 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1719 K19041 - twl:119999828 246.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1719 17 40591839 40593433 Ahy8g0730 8 14418166 14420135 hybridization