Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1696 ATGTCATCAGAAGAACCAATGCAGTTGCGCATCGAAGACAATCATGTGGTTATGGACAATGGCATACTACAAGTTTATTTGTCGAAACCGAGTGGATTTGTCACCAGAATACAATATAATGGCATTGATAATCTGCTGGAAGCTGGAAATGAAAAATTCAACAGAGGGTATTGGGACGTTGTTTGGAGTAAAGAAGGAAGTGCAGGAACTACCGGAACATTTGAGCGGATTGTAGGAACGAGTTTTAATGTTATAGTGGAAAATGAAGAACAAATTGAAATATCGTTCACGAGAATGTGGGATCCGTCTATGGAAGGAAAGCTTTCCCCTCTCAACATTGACAAAAGGTATGTGATGCTACGTGATTCCTCAGGATTCTATTGCTACGCAATATTTGAACACCAAAAGGAGTGGCCTGCTTTCAACATCCCCCAAATCAGGATCGTTTTCAAGCTTCGAGAAGACAAGTTTCATTATATGGCAGTGGCAGATAATAGACAAAGATTCATGCCTCTTCCAGAGGACCGATCACCCGGAAGGGGAAAAGTACTCGTTCCCCCGGAAGCAGTTTTGCTTGCTGACCCTGTGGAGCCAGAGTTCCAGGGGGAGGTGGATGACAAGTACCAATACTCATGTGAAAACAAAGATCTAAAGGTTCATGGGTGGATAAGTTCTAAATCGGAAAGTGATACAGGCACAGGATTTTGGGTAATCATACCTAGCAATGAGTTTCGTTCGGGTGGCCTCGCTAAACAGAATCTTACCTCCCATGTGGGTCCTATTAGCCTCGCCATGTTTCTTAGCGCTCATTACGCAGGAGAGGATCTGGTCCTGAAACTCAGTCCAAACGAACCTTGGAAGAAAGTTTTTGGCCCCACTTTTATATATCTTAATGCCTTGTTGGATGGTGAAGACCCACTTGAGCTTTGGGAGGATGCCAAAGATCAGATGAATGAGGAAGTTGAAAACTGGCCCTATGATTTTCCAGCTTCAGAGGATTTTCAAATTTCTAGCGAAAGGGGCAGTGTAAGTGGCACGTTACTAGTTAGAGACAGGATGTTAAGTGACGATTCCATTGGAGCAAGAGGTGCATACGTAGGACTAGCACCACCTGGTGAAGCTGGATCATGGCAAAGAGAATGCAAGGGATACCAATTCTGGAGTATAGCAGATGATGATGGGTACTTCTCAATTGATAATATACGTAGTGGCGATTACAATATCTATGCATGGGTTCCAGGTTTCATTGGAGACTATCGGAGCAATTATGTCCTCACCATAACTCCAGGCTGTGACAAAAACATTAGTGACATTATTTTTGAGCCTCCAAGAGATGGTCCAACTTTATGGGAAATAGGAATTCCAGATCGTTCTGCTGCCGAGTTCTATGTTCCTGATCCCAATCCAAATTACATAAACAAGCTCTATATCGATCATCCAGATAAGTTTAGGCAATATGGCCTGTGGGAAAGATATTCAGAGTTATACCCAAGGGAAGATTTAATTTATACTGTTGGTGTTAGTGATTACAGCAAAGATTGGTTCTTTGCACATGTCACCAGGAAGAAAGATGATGGCACTTACCAAGGCACTACATGGCAAATTAAGTTCGATCTTGGTCATGTGGAGGCAGGTGGAACCTATAAGCTGCGATTGGCTCTTGCAAGTGCAAATGTCTCTGAATTACAGGTTAGAGTGAATGATGAAAAGCAAGATCCTCCACTATTTACAACCGGGGTTATTGGAAAGGACAATGCAATAGCTAGACATGGAATTCATGGACTATACTGGCTATTCACCATTGATGTGCTTGCCCATCAATTATTGGAAGGAAACAATACCGTTTATCTAACTCAGGCCATCGCTACAGGCCCCTTTCAGGGAATAATGTATGACTATATTCGTTTTGAGTGTCCCAATTCTTCTTCTGTAAAAGAAATTCAGGTTTAG 1950 0.4246 MSSEEPMQLRIEDNHVVMDNGILQVYLSKPSGFVTRIQYNGIDNLLEAGNEKFNRGYWDVVWSKEGSAGTTGTFERIVGTSFNVIVENEEQIEISFTRMWDPSMEGKLSPLNIDKRYVMLRDSSGFYCYAIFEHQKEWPAFNIPQIRIVFKLREDKFHYMAVADNRQRFMPLPEDRSPGRGKVLVPPEAVLLADPVEPEFQGEVDDKYQYSCENKDLKVHGWISSKSESDTGTGFWVIIPSNEFRSGGLAKQNLTSHVGPISLAMFLSAHYAGEDLVLKLSPNEPWKKVFGPTFIYLNALLDGEDPLELWEDAKDQMNEEVENWPYDFPASEDFQISSERGSVSGTLLVRDRMLSDDSIGARGAYVGLAPPGEAGSWQRECKGYQFWSIADDDGYFSIDNIRSGDYNIYAWVPGFIGDYRSNYVLTITPGCDKNISDIIFEPPRDGPTLWEIGIPDRSAAEFYVPDPNPNYINKLYIDHPDKFRQYGLWERYSELYPREDLIYTVGVSDYSKDWFFAHVTRKKDDGTYQGTTWQIKFDLGHVEAGGTYKLRLALASANVSELQVRVNDEKQDPPLFTTGVIGKDNAIARHGIHGLYWLFTIDVLAHQLLEGNNTVYLTQAIATGPFQGIMYDYIRFECPNSSSVKEIQV* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1696 649 Gene3D - 446 636 - -
Ahy17g1696 649 CDD RGL4_M 339 438 IPR029413 -
Ahy17g1696 649 Coils Coil 552 572 - -
Ahy17g1696 649 CDD RGL4_N 7 298 - -
Ahy17g1696 649 Pfam Polysaccharide lyase family 4, domain III 448 635 IPR029411 -
Ahy17g1696 649 Pfam Polysaccharide lyase family 4, domain II 361 434 IPR029413 -
Ahy17g1696 649 Gene3D - 7 276 IPR014718 GO:0030246
Ahy17g1696 649 SUPERFAMILY Galactose mutarotase-like 13 298 IPR011013 GO:0003824|GO:0005975|GO:0030246
Ahy17g1696 649 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 7 643 - -
Ahy17g1696 649 CDD RGL4_C 450 637 - -
Ahy17g1696 649 Gene3D - 336 436 - -
Ahy17g1696 649 SUPERFAMILY Starch-binding domain-like 338 431 IPR013784 GO:0030246
Ahy17g1696 649 Pfam Rhamnogalacturonate lyase family 10 204 IPR010325 -
Ahy17g1696 649 SUPERFAMILY Galactose-binding domain-like 445 637 IPR008979 -
Ahy17g1696 649 PANTHER LG27/30-LIKE GENE 7 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1696 Ahy-Chr17 39127592 39150163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1696 7 640 Polysaccharide Lyase AT1G09890 64.724 0.0 867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1696 K18195 - gmx:100815677 1082.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1696 17 39127592 39150163 Ahy17g1696 17 39127592 39150163 ECH
Ahy17g1696 17 39127592 39150163 Ahy8g0766 8 15196869 15202770 hybridization