Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1693 ATGGGGAGAGGGAAGATCGCGATAAGAAGGATCGACAATTCCACGAGCAGGCAAGTGACCTTCTCAAAGCGAAGGAACGGTTTGTTGAAGAAGGCGAAGGAGCTTGCGATTTTGTGCGATGCTGAGGTTGGAGTTATGATCTTTTCCAGCACTGGCAAACTCTATGATTTCTCCAGTACCAGCATGAAATCAGTAGTTGATCGATACAACAAAACCAAGGAAGAACTAGATCAGCTTGGGAGTTCAACCTCTGAAGTTAAGTTTTGGCAACGGGAGGCGGCAATGCTAAGGCAACAATTGCTAAGTTTGCAAGAGAGTCACCGGCAAATTATGGGAGAAGAATTGTCAGGTTTGACAATCAAAGATTTACAGACTTTGGAGAACCAGTTGGAAATTAGCCTTCGAGGTGTCCGTACAAAAAAGGATCAGCTTTTAATGGATGAAATACAAGAATTAAATCGAAAGGGGAACCTCATACACCAAGAAAATGTGGACCTATACGAGAAGATAAACTTAATCCGTCAAGAAAACATGGAATTAAAAAAGAAGAATGTGGAGAATAGAAATTCTGTCCTCACAAACAGTCTAGCCATAAAAGACGATTCTCAAGTTCCTGTGTGTCTCCAACTAAGCCAGCCACAATAA 645 0.4186 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFSSTSMKSVVDRYNKTKEELDQLGSSTSEVKFWQREAAMLRQQLLSLQESHRQIMGEELSGLTIKDLQTLENQLEISLRGVRTKKDQLLMDEIQELNRKGNLIHQENVDLYEKINLIRQENMELKKKNVENRNSVLTNSLAIKDDSQVPVCLQLSQPQ* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1693 214 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy17g1693 214 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy17g1693 214 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy17g1693 214 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy17g1693 214 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Ahy17g1693 214 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Ahy17g1693 214 Gene3D - 13 109 IPR036879 GO:0003677|GO:0046983
Ahy17g1693 214 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ahy17g1693 214 Coils Coil 163 183 - -
Ahy17g1693 214 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 214 - -
Ahy17g1693 214 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy17g1693 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ahy17g1693 214 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 214 - -
Ahy17g1693 214 Coils Coil 86 106 - -
Ahy17g1693 214 Pfam K-box region 82 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy17g1693 214 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1693 Ahy-Chr17 38848765 38857670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1693 1 214 MADS-box Gene Family AT4G37940 62.963 1.63e-90 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy17g1693 K-box 7.00E-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1693 K09264 - gmx:100812413 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1693 17 38848765 38857670 Ahy17g1693 17 38848765 38857670 ECH