Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1580 ATGGTAAGTGGTGGTGGCTGTATTAGGCCTCAAGAGGATTCACTTAATAACCCCATTGATATGGTAGTTGGTACCCCTGGAAGGATTCTTCAACATATTGAGGAGGGCATCCTAGTGTATGGCGACATCAAATACTTGGTCTTGGATGAGGCAGATACAATGTTTGATCATGGCTTTGGTCCTGATATACGCAAATTTCTGGCCCCATTGAAACATCGTGCATCAAAGTCTGATGGCCTAGGTTTTCTGACCGTCTTGGTAACCGCAACAATGACAAAGGCTGTGCAAAAGCTAATTGATGAGGAGTTTCAGGGCATTGTACATCTGCGAATATCAACATTGCATAAAAAGATTTCTTCTGCTCGTCACGATTTTATTAAACTTTCAGGTTCTGAGAACAAGCTGGAAGCATTACTTCAGGTACTTGTGCCAAGCCGAGCAAAAGGCAACAAGGTGATGGTTTTTTGCAATACTTTGGACTCTAACCGTGCGGTGGATCACTACCTTGTTGAAAATATGATTCCTACTATCATCTACCATTGGAAAGTACCAGCAGAGCAAAGGGGAAGTACCAGCAGAGCAAAAGTGAAGGTTGAAAACCTCAATAAATTTAAGAATGACATTGATGATCGTCCAACATTAGTTTGCACAGACTTGGCCGCTAGGGGTCTGGACTTGGATGTAGACCATGTTGTTAAGTTTGACTTCCCCTTGAACTCTATCGATTACTTTCATTGGACTGGTAGAACTGCTTGTATGGGTGAAAAGGTGAAAGTAACCAGTTTGGTTACAAAGAAGGACTTGATCTTGGCCACTAGAATAGAGGAGGCAATGAGGAAGAATGAGAGTTTGGAGGCTATCACGAAAGGAGTACGAAGGGATATCGCCAGGACCCAAGTTAATGGGCAGAGTGGGAAGGACAGAAAATTAGTTAAAGTTTCTAAAGTTAAGAACAATCCTGGTGGACGTGCCAGTTTAGGGAATAAAGGATCGGATTTGAAATCCGGAAAAGGATCATCATCAAAAAAATCTATGAAGAAATGGATTAAGGTTTCAAATTCTGTAAAATCCTCCAATGCAAATAGCTCGAGAAAAGCTTCTTCAGGGTATAAGCAAACAAGTAAAAGGACCAGTGCCACCAAATCGACAAATTCTAAACTCAGTACTATAACTAGTTGA 1179 0.4139 MVSGGGCIRPQEDSLNNPIDMVVGTPGRILQHIEEGILVYGDIKYLVLDEADTMFDHGFGPDIRKFLAPLKHRASKSDGLGFLTVLVTATMTKAVQKLIDEEFQGIVHLRISTLHKKISSARHDFIKLSGSENKLEALLQVLVPSRAKGNKVMVFCNTLDSNRAVDHYLVENMIPTIIYHWKVPAEQRGSTSRAKVKVENLNKFKNDIDDRPTLVCTDLAARGLDLDVDHVVKFDFPLNSIDYFHWTGRTACMGEKVKVTSLVTKKDLILATRIEEAMRKNESLEAITKGVRRDIARTQVNGQSGKDRKLVKVSKVKNNPGGRASLGNKGSDLKSGKGSSSKKSMKKWIKVSNSVKSSNANSSRKASSGYKQTSKRTSATKSTNSKLSTITS* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1580 392 SMART helicmild6 163 254 IPR001650 -
Ahy17g1580 392 Pfam Helicase conserved C-terminal domain 134 251 IPR001650 -
Ahy17g1580 392 Gene3D - 1 111 IPR027417 -
Ahy17g1580 392 Pfam DEAD/DEAH box helicase 4 98 IPR011545 GO:0003676|GO:0005524
Ahy17g1580 392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 274 IPR027417 -
Ahy17g1580 392 MobiDBLite consensus disorder prediction 299 392 - -
Ahy17g1580 392 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 1 328 - -
Ahy17g1580 392 MobiDBLite consensus disorder prediction 345 392 - -
Ahy17g1580 392 CDD SF2_C_DEAD 122 263 - -
Ahy17g1580 392 Gene3D - 115 287 IPR027417 -
Ahy17g1580 392 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 109 IPR014001 -
Ahy17g1580 392 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 134 295 IPR001650 -
Ahy17g1580 392 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 1 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1580 Ahy-Chr17 32303782 32306795 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1580 4 276 Eukaryotic Initiation Factors Gene Family AT3G19760 25.623 1.75e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1580 - - ahf:112766979 697.197