Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1562 ATGGTTGTCAAGCAGCATATAACTCGATCACTTTCGGTTCCAGTTGATGCCAAAGCCAGCAAATTGAGGTGCACTCAATCTAGGGTCTTGATTCGTATCATTTCAGCCAGGCGGCATCTTGCAACTGTTGATGGAACTTCAACTGGTGATTCTTCAGTCATGGAGATTGCTATTGAGGATGCTATAGCAGATATTCCAGAGGAAGAAGCAGTTTGTAGGATTTGTTTGGCAGAGCTCGGGGAAGGAGAGAATACTCTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCATCAAGACTATGCAGTAAAGTGGTTTAGTATTAAGGGCAAAAGGACTTGCGATATCTGCAAGCAGGATGTTCAAAACCTCCCGGTAACACTATTGAAAATTTATGATCGTCAACCCCCTGTCAGACAGCCACCAAATGTGCCACAACCAAGGGAAATAGCTTATTACTAA 468 0.4316 MVVKQHITRSLSVPVDAKASKLRCTQSRVLIRIISARRHLATVDGTSTGDSSVMEIAIEDAIADIPEEEAVCRICLAELGEGENTLKMECSCKGDLALAHQDYAVKWFSIKGKRTCDICKQDVQNLPVTLLKIYDRQPPVRQPPNVPQPREIAYY* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1562 155 PANTHER OS02G0165000 PROTEIN 3 154 - -
Ahy17g1562 155 PANTHER OS02G0165000 PROTEIN 3 154 - -
Ahy17g1562 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 127 IPR013083 -
Ahy17g1562 155 SUPERFAMILY RING/U-box 68 123 - -
Ahy17g1562 155 CDD RING_CH-C4HC3_MARCH 72 120 - -
Ahy17g1562 155 Pfam RING-variant domain 72 119 IPR011016 GO:0008270
Ahy17g1562 155 SMART ringv_2 71 120 IPR011016 GO:0008270
Ahy17g1562 155 ProSiteProfiles Zinc finger RING-CH-type profile. 64 126 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1562 Ahy-Chr17 31770299 31772013 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1562 55 126 C3H Transcription Factor Family AT2G37950 45.205 2.99e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1562 - - ahf:112765571 285.419