Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1560 ATGCCGCATTATCTTCTTTCGCAAAGACAGATGGTCCTTCCACATCCACCTACTTCAAGGACCCTCTCTCTTAATGGTAAAGGTTCATTCTCTCCATTGTCAAAGGTTGCCCACTCATTACCGGTTACTCCAATCGCATCTTTGGGTCAAGAAAGTGTACATGGCAGACATCTGGGATGTGCTTCTGATTTAAATACAATGGTTGTCAAGCAGCATATAACTCAATCACTTTCGGTTCCAGTTGATGCCAAAGCCAGCAAATTGAGGTGCACTCAGTCTAGGGTCTTGATTCGTATCATTTCAGCCAGGCGGCATCTTGCAACTGTTGATGGAACTTCAACTGGTGATTCTTCAGTCATGGAGATTGCTATTAAGGATGCTACAGCAGATATTCCAGAGGAAGAAGCAGTTTCTAGGTTTTGTTTGGCAGAGCTCGGGGAAGGAGAGAATACTCTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCATCAAGACTGTGCAGTAAAGTGGTTTAGTATTAAGGGCAACAGGACCTGCGATATCTGCAAACAGGATGTTCAAAACCTCCCGGTAACACTATTGAAAATTTATGATCGTCAACCCCCTGTCAGACAGCCACCAAATGTGCCACAACCAAGGGAAATAGCTTATTACCAAATGGTCCCTGAAGGAGAGAAGAAGAGATACTAG 699 0.4392 MPHYLLSQRQMVLPHPPTSRTLSLNGKGSFSPLSKVAHSLPVTPIASLGQESVHGRHLGCASDLNTMVVKQHITQSLSVPVDAKASKLRCTQSRVLIRIISARRHLATVDGTSTGDSSVMEIAIKDATADIPEEEAVSRFCLAELGEGENTLKMECSCKGDLALAHQDCAVKWFSIKGNRTCDICKQDVQNLPVTLLKIYDRQPPVRQPPNVPQPREIAYYQMVPEGEKKRY* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1560 232 PANTHER OS02G0165000 PROTEIN 15 222 - -
Ahy17g1560 232 ProSiteProfiles Zinc finger RING-CH-type profile. 130 192 IPR011016 GO:0008270
Ahy17g1560 232 SMART ringv_2 139 186 IPR011016 GO:0008270
Ahy17g1560 232 CDD RING_CH-C4HC3_MARCH 139 186 - -
Ahy17g1560 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 193 IPR013083 -
Ahy17g1560 232 SUPERFAMILY RING/U-box 136 189 - -
Ahy17g1560 232 Pfam RING-variant domain 139 185 IPR011016 GO:0008270
Ahy17g1560 232 PANTHER OS02G0165000 PROTEIN 15 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1560 Ahy-Chr17 31761506 31762783 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1560 121 192 C3H Transcription Factor Family AT2G37950 45.205 1.77e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1560 - - aip:110265370 441.039