Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1532 ATGGGCCTCTCAAGTCTGCCATCGCCATCCGAAGGAGTGCTATGTGCACTTCTTGTTAACACTGTGCTCTCAGTCTCCATATTTAAAGGCATTGTTAGGACAATCCTTCACATTGTTGGCATCCACCTTTCATCATCCTCGGTTTCGCCATCGTCCTCTTCGCCAAATGCCACCTCCCAGAGCCATCAACCATCCGAGTCATTCGAGTTCCTCCTTAGCCCCTCAGAAACATTCATCGAAGAGTTTAGGAGCCGGACGCCTACAATCCGCTTCGACAGCATGTTCTCCTGTGGAAAACCTGAACATGACTGCTGTGTGTGCCTCTCTCAATTTGAGCCGGAATCTGAGATAAACCGCTTGCCCTGCGGCCATCTCTTCCACAAAGTGTGCTTGGAGAAGTGGTTGGATTATTGGAACATCACATGCCCACTTTGCAGGAACCCTTTGATGCCTGAAGACAATGATCCATGGCTCTTAGTAAGCAATGAATGA 492 0.4898 MGLSSLPSPSEGVLCALLVNTVLSVSIFKGIVRTILHIVGIHLSSSSVSPSSSSPNATSQSHQPSESFEFLLSPSETFIEEFRSRTPTIRFDSMFSCGKPEHDCCVCLSQFEPESEINRLPCGHLFHKVCLEKWLDYWNITCPLCRNPLMPEDNDPWLLVSNE* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1532 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 151 IPR013083 -
Ahy17g1532 163 SUPERFAMILY RING/U-box 103 152 - -
Ahy17g1532 163 SMART ring_2 104 145 IPR001841 -
Ahy17g1532 163 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 154 - -
Ahy17g1532 163 Pfam Ring finger domain 103 146 IPR001841 -
Ahy17g1532 163 SMART ringv_2 103 146 IPR011016 GO:0008270
Ahy17g1532 163 PANTHER - 1 154 IPR044249 -
Ahy17g1532 163 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1532 Ahy-Chr17 30977428 30979255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1532 1 155 C3H Transcription Factor Family AT2G04240 62.025 8.60e-56 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1532 K16285 - gmx:100786803 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1532 17 30977428 30979255 Ahy17g1532 17 30977428 30979255 ECH