Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1518 ATGAAGTGGGAAATGGAAATATTGTCTCCAACTACAACACCTTATAATCCAAATTCCAACCTCAGCAATACCAACAACACCTTCAATTGGCTTCTTGGAGATGGAAGGAGCACAAGATGGACACCGGAAGAGAACAAGCTCTTCGAAAATGCGCTGGCCGTTCACGACAAGGACACGCCGGACCGGTGGCACCAGGTGGCTGCAATGATACCTGGGAAGACAGTTGGAGATGTTATCAAGCAATACAAGGAATTAGAAGTTGATGTGTGTAACATTGAGGCTGGTTTGATCCCGGTTCCGGGGTATAGTACTACTTCACCATTTACCTTAGAATGGGTGAATTCTCAAGGGTATGATGATGGATTTAAAGGATTAAGTGGAAAGAGACCTTCTTCTTGCTCAGGGAAGCCACCTGAGCAAGAAAGGAAGAAAGGAGTGCCATGGACTGAAGAAGAACATAAATTGTTCTTGCTTGGTTTGAAGAAGTATGGGAAAGGTGACTGGAGAAACATTTCGCGAAATTTTGTGATAACAAGAACACCAACACAGGTTGCAAGCCATGCTCAGAAGTACTTCATAAGGCAACTTTCCGGAGGCAAAGACAAAAGGAGAGCAAGCATCCATGACATAACAACAGTTAATGTCACCGAAACCGGAACATCTTCTTCAGAAGACACCAAAAGTTCTATGATGCTCTCACAGCAGCAGCAGCAACAAAATTCTAGTTCTGCTGGAACTATACCAAGAACTCATCATTTTCAGTGGAATAATCAACAACCAAATAATGCAGCAGGAGGAGTAGCTATGGAAAAAGTTTTCAATTCTGCTTATGGTGTTAACTCATTTGGGGTTACAATAATGGAAGGGCAAAATCTGAACAAGAGTGTTGAATCTTCTTCATCTTCTTCTTACTTAGGACCTCAGACACAGAACCTGGTTTTCCAAATGCAACAACAATCCTCACAGCAACAACAACAACAACACTATTCCCATGCATAA 999 0.4234 MKWEMEILSPTTTPYNPNSNLSNTNNTFNWLLGDGRSTRWTPEENKLFENALAVHDKDTPDRWHQVAAMIPGKTVGDVIKQYKELEVDVCNIEAGLIPVPGYSTTSPFTLEWVNSQGYDDGFKGLSGKRPSSCSGKPPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNVTETGTSSSEDTKSSMMLSQQQQQQNSSSAGTIPRTHHFQWNNQQPNNAAGGVAMEKVFNSAYGVNSFGVTIMEGQNLNKSVESSSSSSYLGPQTQNLVFQMQQQSSQQQQQQHYSHA* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1518 332 SUPERFAMILY Homeodomain-like 141 195 IPR009057 -
Ahy17g1518 332 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 143 195 IPR006447 GO:0003677
Ahy17g1518 332 ProSiteProfiles SANT domain profile. 148 196 IPR017884 -
Ahy17g1518 332 SMART sant 144 194 IPR001005 -
Ahy17g1518 332 SMART sant 36 88 IPR001005 -
Ahy17g1518 332 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 298 - -
Ahy17g1518 332 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 298 IPR043363 -
Ahy17g1518 332 Gene3D - 34 99 - -
Ahy17g1518 332 MobiDBLite consensus disorder prediction 217 247 - -
Ahy17g1518 332 Gene3D - 146 196 - -
Ahy17g1518 332 ProSiteProfiles Myb-like domain profile. 140 192 IPR001005 -
Ahy17g1518 332 ProSiteProfiles SANT domain profile. 35 90 IPR017884 -
Ahy17g1518 332 MobiDBLite consensus disorder prediction 296 332 - -
Ahy17g1518 332 CDD SANT 39 85 IPR001005 -
Ahy17g1518 332 SUPERFAMILY Homeodomain-like 38 92 IPR009057 -
Ahy17g1518 332 CDD SANT 147 192 IPR001005 -
Ahy17g1518 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 196 IPR017930 -
Ahy17g1518 332 MobiDBLite consensus disorder prediction 124 147 - -
Ahy17g1518 332 Pfam Myb-like DNA-binding domain 147 192 IPR001005 -
Ahy17g1518 332 Pfam Myb-like DNA-binding domain 39 83 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1518 Ahy-Chr17 30195923 30198725 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy17g1518 Myb_DNA-binding 1.70E-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1518 - - gmx:778034 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1518 17 30195923 30198725 Ahy17g1518 17 30195923 30198725 ECH
Ahy17g1518 17 30195923 30198725 Ahy17g0990 17 12468825 12470694 ECH
Ahy17g1518 17 30195923 30198725 Ahy11g0426 11 5816066 5818688 ECH
Ahy12g1983 12 102431997 102435249 Ahy17g1518 17 30195923 30198725 ECH
Ahy17g1518 17 30195923 30198725 Ahy7g1303 7 26750963 26753728 hybridization