Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1479 ATGAGGGAGAGATCAAGCATAGCGAAAGACTCCAGAGTCTGGAATCGGGAGGAGTACGTTCGGCTTGAACGAGATTCATTCAGTGTTTTCGTGGACAGTTTACCAGCGGATATCTCGAAACGCGAGTTGTTTGGGTTATTCTCTTGGACGGGACGGATCAACGACATATACCTCTCAAGAAAGACGAGAAATGGGAAGATCTACCTATTTGCCTTCATACGATATACTACGAAGGGAGGAGCGCTGAAGGCTATTGCTGAAATGAATCACATGCTATTAAGGGGGAAAGAGCTTTATGTAGGGGATGCTAAGTATAGGAGGGATGCTTCTAAGGGACGAAGAGTGGCAGAGGTGGTGGCGGAGGGAAGGCCACACCACCGCCAGGCTGAGGTCAATAACGCGGTAAGGGAGCACACAGTTGGGATCCAGCCATCTCCAAACATGGTGCAGGGGGCACGGCCGAGTGCTCTAGATATTGCAACACATGCCATAGAGGAGGATTCTAAGAAAATGGGGGCAATGTTGTCAATCTCGAATGGCTGCAAAGGAGTGTGA 555 0.4955 MRERSSIAKDSRVWNREEYVRLERDSFSVFVDSLPADISKRELFGLFSWTGRINDIYLSRKTRNGKIYLFAFIRYTTKGGALKAIAEMNHMLLRGKELYVGDAKYRRDASKGRRVAEVVAEGRPHHRQAEVNNAVREHTVGIQPSPNMVQGARPSALDIATHAIEEDSKKMGAMLSISNGCKGV* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1479 184 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 98 IPR000504 GO:0003723
Ahy17g1479 184 Gene3D - 2 137 IPR012677 -
Ahy17g1479 184 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 105 IPR000504 GO:0003723
Ahy17g1479 184 SMART rrm1_1 28 101 IPR000504 GO:0003723
Ahy17g1479 184 SUPERFAMILY RNA-binding domain, RBD 23 113 IPR035979 GO:0003676
Ahy17g1479 184 CDD RRM_SF 29 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1479 Ahy-Chr17 27570278 27570832 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1479 28 112 Eukaryotic Initiation Factors Gene Family AT3G16380 28.090 1.25e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1479 K12891 - aip:107648691 172.555