Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1465 ATGCAAACACAAAACAAGTCATCTAACTCACTGAGTCAACTCGCTCAGAGCATGTTCTCATCCAACAACACCATCATGCTTGCCGCCATTGTTTCTCTTCTCCTTGTAATTCTCTTCGTCCTTCTCCTCCATCTCTATGCCAAATGCTTCCTCTCTCACTCTCACCCACCACCTCAACAACCTCCCCGCCGTCGCCGCCGCCATCGCCGCCGTGCAACTCTCCCCGCCTTCCAGGGTCCACCCCAGTTCCAGTTCCACCACTTGCGCGTGGAAGACTCACCCTTTGCCACCAAAGGACTCGATTCCGCTACGGTTTCAGCGATTCCCATGTTTGTGTACGAAGCAGAGAAGAAGAAGAAAACAGAGCAGGAAGAAGAAGACAGAGAGGAATTAGAATGTGTGATTTGTTTGAGCGGTTTCGAAGAAGGTGAAATGGGAAGAACATTACCAAAATGTGGACACGCTTTTCACGTGGAATGCATTGATATGTGGCTGAGTTCTCATTGTAATTGTCCCATTTGCAGAGCTCCTGTTGTTCATCCGAATGATACAGGTTCTGTTGATGACGAAGATGATGATGATGTGGTTCAGATTGTTATTGGTACTCCGAGTTATGAGATTAGTGAGAGTGAGAATGGGAACAATGATGAGGATAATAATTCAGTTTCAGTTTCAGGTTCAGAAACTTCATATTCTTCTTCTTCATCGTCCTCTTTGTTGTTGGGGTGTTCTTTCAAGAGAATGCTGAGAAAGGTTTTTGTCTCGTGA 768 0.4596 MQTQNKSSNSLSQLAQSMFSSNNTIMLAAIVSLLLVILFVLLLHLYAKCFLSHSHPPPQQPPRRRRRHRRRATLPAFQGPPQFQFHHLRVEDSPFATKGLDSATVSAIPMFVYEAEKKKKTEQEEEDREELECVICLSGFEEGEMGRTLPKCGHAFHVECIDMWLSSHCNCPICRAPVVHPNDTGSVDDEDDDDVVQIVIGTPSYEISESENGNNDEDNNSVSVSGSETSYSSSSSSSLLLGCSFKRMLRKVFVS* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1465 255 CDD RING-H2_EL5_like 133 175 - -
Ahy17g1465 255 SMART ring_2 133 174 IPR001841 -
Ahy17g1465 255 SUPERFAMILY RING/U-box 121 181 - -
Ahy17g1465 255 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Ahy17g1465 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 180 IPR013083 -
Ahy17g1465 255 MobiDBLite consensus disorder prediction 206 238 - -
Ahy17g1465 255 Coils Coil 112 134 - -
Ahy17g1465 255 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 4 254 IPR044675 -
Ahy17g1465 255 Pfam Ring finger domain 132 175 IPR001841 -
Ahy17g1465 255 PANTHER - 4 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1465 Ahy-Chr17 27227608 27228769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1465 19 223 Rapid Response to Elicitors AT3G16720 35.922 5.85e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1465 - - aprc:113874423 205.682
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1465 17 27227608 27228769 Ahy17g1465 17 27227608 27228769 ECH
Ahy17g1465 17 27227608 27228769 Ahy7g1207 7 21717821 21718968 hybridization
Ahy17g1465 17 27227608 27228769 Ahy17g1465 17 27227608 27228769 PCT
Ahy17g1465 17 27227608 27228769 Ahy7g1207 7 21717821 21718968 PCT
Ahy7g1207 7 21717821 21718968 Ahy17g1465 17 27227608 27228769 PCT