Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1379 ATGCTATCAGGGGACATACCCCCAAACCAGACCATTTACATCAAGAACCTCAACGAGAAGATCAAGAAAGACGAGTTAAAGCGATCATTATATTGCCTGTTCTCTCAATATGGGAGGATCCTGGATGTTGTTGCCCTAAAGACACCTAAGCTTCGAGGACAAGCATGGGTTTGTTTTAGCGAAGTCCCTGCTGCTAGTAATGCGGTCCGACAAATGCAAAACTTCCCATTTTATGACAAACCTATGCGAATTCAATATGCAAAAACAAAGTCAGATTGTATTGCTAAAGAAGAGGGAAGTTATGTTCCAAGGGAAAAGAAAAAGAAACAAGAGGAGAAAGCAGCTGAAAGAAAGCGGCGTGCTGACGAAGCACAGCAATCTGCGGTGCCTAATGGAACACATGGTGCAAGTAATGGTGGCCCGACGCCCTCGTTCCGTCAAGGTCCTAGCACCCAAGAAGCTGTGCCTCCTAACAATATTTTGTTCATAGAGAATTTGCCTCATGAAACTACTGGAAGGATGCTGGAGATGCTCTTCGAACAATACCCGGGTTTTAAGGAAGTGCGCTTGATTGAAGCAAAGCCAGGTATTGCATTTGTAGACTTCGACGACGAGGTGCAATCGTCCATGGCCATGCAGGCACTTAACGGCTTCAAAATCACCCCTCAAAATCCCATGATCATAACCTTTGCCAAGAAGTAG 702 0.4516 MLSGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVCFSEVPAASNAVRQMQNFPFYDKPMRIQYAKTKSDCIAKEEGSYVPREKKKKQEEKAAERKRRADEAQQSAVPNGTHGASNGGPTPSFRQGPSTQEAVPPNNILFIENLPHETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFDDEVQSSMAMQALNGFKITPQNPMIITFAKK* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1379 233 CDD RRM1_U1A_like 11 88 - -
Ahy17g1379 233 Gene3D - 149 233 IPR012677 -
Ahy17g1379 233 SMART rrm1_1 160 229 IPR000504 GO:0003723
Ahy17g1379 233 SMART rrm1_1 11 85 IPR000504 GO:0003723
Ahy17g1379 233 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A 4 233 - -
Ahy17g1379 233 Gene3D - 4 113 IPR012677 -
Ahy17g1379 233 Coils Coil 104 127 - -
Ahy17g1379 233 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 4 233 - -
Ahy17g1379 233 MobiDBLite consensus disorder prediction 126 154 - -
Ahy17g1379 233 SUPERFAMILY RNA-binding domain, RBD 8 222 IPR035979 GO:0003676
Ahy17g1379 233 CDD RRM2_U1A_like 157 229 - -
Ahy17g1379 233 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 233 IPR000504 GO:0003723
Ahy17g1379 233 MobiDBLite consensus disorder prediction 98 124 - -
Ahy17g1379 233 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 220 IPR000504 GO:0003723
Ahy17g1379 233 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 82 IPR000504 GO:0003723
Ahy17g1379 233 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 89 IPR000504 GO:0003723
Ahy17g1379 233 MobiDBLite consensus disorder prediction 98 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1379 Ahy-Chr17 24116832 24120425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1379 3 233 Eukaryotic Initiation Factors Gene Family AT1G71770 23.629 3.53e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1379 K11094 - gmx:100805822 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1379 17 24116832 24120425 Ahy17g1379 17 24116832 24120425 ECH
Ahy17g1379 17 24116832 24120425 Ahy7g1138 7 19254292 19257895 hybridization