Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1335 ATGGACATATCTTTGTTAAATGTGCTCTCCAATGGCATATCCTCATTTTTGCATCCATCATTTTCTGGAAACATGAACTCAAAACCTGTATCAATGTATTGCCAAAGTGCAGAGCAGACACTTAAGTTGTTGAAGCCAATTATCGACACAACTGTTCATTCTGATATATCTGCTGATGAAGAGCTTAGAAAGTTATTTGAGGAACTTGGTCAGTCTGTTGATGAGTTGAGGGAGCTTTTCGAGAATTGGCATCCGCTATCCAGTAAATTTTACTTTGTGATGCAAGCTGAACCGTTGATAGCTAGAATTCAGTCTATAGGGTTCAATATTTTGCAGAAGCTGAAGGCTTCACAGCAATGTCTACCTGATGATTTGGGGCATGATATGACATCAATCATTAAGGAAGCTATAAATGAACAACCGGAAGGCGAAGGACCAAGTTCTGAGATTCTAGCAAATATTGCCGAGATCCTCGACTTAAGGTCTAATCAAGATGTTTTGATTGAAGCTGTGGCCCTTGAAAGGTTGAAGGAGAATGCTGAACAAACTGAAAACATTGCAGAAGCTGAGTATATTGATCGAATGATCTCTGTTGTGACTCGAATGCATGAGCGAATCATCATTCTCAAGCAAGCTCAGAGCTCTATCCCGGATTCGGTACCTGCTGATTTTTGCTGTCCTCTCTCTTTGGAATTGATGACAGATCCAGTCATTGTGTCATCCGGGCAAACCTATGAGCGAACTTTCATCAAGGACTGGATTGATCTTGGGCTCATGGTTTGTCCAAAGACTCGTCAGACTCTGGTTCATTCCAACCTAATACCTAACTACACTGTAAAAGCATTAATTGTTAATTGGTGCGAAACAAACAATGTGATACTAGTTGATCCAGTAAAGTCCACAAACATAAATCAACTGTCTCTCCTTCATGGATCTATTGAGTCTGGTACAATCAAGGAATCAACTGTTAGAACTTCTTTCAGTGCAAACCATCAAGAGGAAACATCACCATTCCATCCTAGTTCAACTCCAGAAGATTCCTTTAGTGGCGTGGATAATGCACAGCATGTGGATCCTGTAAGAATATCATCTGCAGTTTCAGATGACAGGTCTGCTAGCTCGGACGAAGAAAGTGTGGATTTAGTTTCACAATCATCAACTTCACCATCTAGAAGGGAAGCTTCAAATGCCTTGAGATCAGAGCAATCTCAAAACCATGTAAGAACTTATTCTGATTCCAGTGAACACTCTAGTGAAAATTTTCATCAAGGCATACAGGGTGATAGCAACAATGGTCCTCTTCCATCATCAACCAGTCCAATCCACAGTCGAGATGCTTCTGAGGAATTAGCTCCCGAGCTGGATGCTGGTGCCAGGCCAATTCCACAAGGCGAGCCCGAGTTTTCACCACAACTTGTGCAGCCAAGGTTTCCAAGAAAAACTGTATTACAACGGCCGTCAGAGAGGTTTGTCCCTAGGATAGTTTCTTCTCCTCCTGTTGAACCAAGAGGCGATGGATCCGGTATTGAATCCAGGGTTAAGGAGTTGATTGAGCTCTTGAAGAGCTCTTCTCTTGATACTCAAAGGGAAGCCACAGGAGAACTCCGCCTTCTTGCTAAGCACAACATGGATAACAGAATTGTGATTGCAAACTGTGGAGCCATTCCCTTGTTGGTCAATTTGCTTCTATCAACCGATACAACAATCCAAGAAAACTCTGTTACAGCACTTCTTAACTTATCAATCAATGACAACAACAAAAATGCAATTGCAAATGCTGGTGCAATTGAACCTCTGATTCATGTCCTTGAGACAGGTAGTGCAGAAGCAAAGGAGAACTCGGCGGCTACTCTTTACAGCTTATCAGTGGTTGAGGAGAACAAGATCAGGATAGGGAGGGCCGGGGCTATTAAACCTCTGGTTGAGTTATTAAGTAATGGAACTCCAAGGGGTAAGAAAGATGCTTCCACTGCTTTATTTAACTTGTCAATATTTCACGAAAACAAGGATCGAATTGTAGAAGCTGGTGCTGTGAAGCACCTTGTAGATTTGATGGACCCTGCAGCCGGAATGGTCGATAAGGCTGTGGCTGTTCTAGCAAATCTGGCCACAATACCGGAAGGAAGAACTGCCATTGGGCAGCAAGGTGGCATTCCTCTTCTGGTTGAGGTTGTTGAGTTGGGTTCTACTAGAGGAAAGGAGAATGCAGCAGCAGCTCTTCTACATTTATGCGTAAACCATCCGAGATATTTAAACATGGTACTCCAAGAAGGAGCTGTTCCACCATTAGTCGCTTTATCAAGATCAGGCACCGCAAGGGCTAAAGAGAAGGCCCTGTCTCTTCTGAATCATTTTAGAGATCGAAGGCATGGTGGTGCTGTGAGGGGCTGA 2391 0.4304 MDISLLNVLSNGISSFLHPSFSGNMNSKPVSMYCQSAEQTLKLLKPIIDTTVHSDISADEELRKLFEELGQSVDELRELFENWHPLSSKFYFVMQAEPLIARIQSIGFNILQKLKASQQCLPDDLGHDMTSIIKEAINEQPEGEGPSSEILANIAEILDLRSNQDVLIEAVALERLKENAEQTENIAEAEYIDRMISVVTRMHERIIILKQAQSSIPDSVPADFCCPLSLELMTDPVIVSSGQTYERTFIKDWIDLGLMVCPKTRQTLVHSNLIPNYTVKALIVNWCETNNVILVDPVKSTNINQLSLLHGSIESGTIKESTVRTSFSANHQEETSPFHPSSTPEDSFSGVDNAQHVDPVRISSAVSDDRSASSDEESVDLVSQSSTSPSRREASNALRSEQSQNHVRTYSDSSEHSSENFHQGIQGDSNNGPLPSSTSPIHSRDASEELAPELDAGARPIPQGEPEFSPQLVQPRFPRKTVLQRPSERFVPRIVSSPPVEPRGDGSGIESRVKELIELLKSSSLDTQREATGELRLLAKHNMDNRIVIANCGAIPLLVNLLLSTDTTIQENSVTALLNLSINDNNKNAIANAGAIEPLIHVLETGSAEAKENSAATLYSLSVVEENKIRIGRAGAIKPLVELLSNGTPRGKKDASTALFNLSIFHENKDRIVEAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPEGRTAIGQQGGIPLLVEVVELGSTRGKENAAAALLHLCVNHPRYLNMVLQEGAVPPLVALSRSGTARAKEKALSLLNHFRDRRHGGAVRG* 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1335 796 Gene3D - 508 791 IPR011989 -
Ahy17g1335 796 SMART arm_5 624 664 IPR000225 GO:0005515
Ahy17g1335 796 SMART arm_5 665 704 IPR000225 GO:0005515
Ahy17g1335 796 SMART arm_5 746 787 IPR000225 GO:0005515
Ahy17g1335 796 SMART arm_5 583 623 IPR000225 GO:0005515
Ahy17g1335 796 SMART arm_5 705 745 IPR000225 GO:0005515
Ahy17g1335 796 SMART arm_5 542 582 IPR000225 GO:0005515
Ahy17g1335 796 PANTHER U BOX DOMAIN-CONTAINING 8 329 - -
Ahy17g1335 796 MobiDBLite consensus disorder prediction 323 350 - -
Ahy17g1335 796 MobiDBLite consensus disorder prediction 377 444 - -
Ahy17g1335 796 Pfam Armadillo/beta-catenin-like repeat 583 622 IPR000225 GO:0005515
Ahy17g1335 796 Pfam Armadillo/beta-catenin-like repeat 626 663 IPR000225 GO:0005515
Ahy17g1335 796 Pfam Armadillo/beta-catenin-like repeat 544 581 IPR000225 GO:0005515
Ahy17g1335 796 Pfam Armadillo/beta-catenin-like repeat 667 703 IPR000225 GO:0005515
Ahy17g1335 796 Pfam U-box domain 220 290 IPR003613 GO:0004842|GO:0016567
Ahy17g1335 796 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 329 - -
Ahy17g1335 796 SMART Ubox_2 223 286 IPR003613 GO:0004842|GO:0016567
Ahy17g1335 796 ProSiteProfiles U-box domain profile. 219 293 IPR003613 GO:0004842|GO:0016567
Ahy17g1335 796 Coils Coil 163 193 - -
Ahy17g1335 796 SUPERFAMILY RING/U-box 210 297 - -
Ahy17g1335 796 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 471 791 - -
Ahy17g1335 796 CDD RING-Ubox_PUB 224 266 IPR045210 -
Ahy17g1335 796 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 511 553 IPR000225 GO:0005515
Ahy17g1335 796 MobiDBLite consensus disorder prediction 323 508 - -
Ahy17g1335 796 PANTHER U BOX DOMAIN-CONTAINING 471 791 - -
Ahy17g1335 796 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 295 IPR013083 -
Ahy17g1335 796 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 553 595 IPR000225 GO:0005515
Ahy17g1335 796 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 635 677 IPR000225 GO:0005515
Ahy17g1335 796 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 676 717 IPR000225 GO:0005515
Ahy17g1335 796 SUPERFAMILY ARM repeat 513 785 IPR016024 -
Ahy17g1335 796 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 594 636 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1335 Ahy-Chr17 22321678 22325819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1335 180 796 U-box Gene Family AT2G23140 59.380 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1335 - - adu:107458158 1479.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1335 17 22321678 22325819 Ahy7g1101 7 17650099 17655953 hybridization
Ahy17g1335 17 22321678 22325819 Ahy17g1335 17 22321678 22325819 PCT
Ahy17g1335 17 22321678 22325819 Ahy7g1101 7 17650099 17655953 PCT
Ahy7g1101 7 17650099 17655953 Ahy17g1335 17 22321678 22325819 PCT