Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1313 ATGGCTAGATCCAAAGTGAAGCTTGCATACATAACCAACGATGCTGCAAGGAGGGTTACATACAAGAAGAGAAAAAGAGGGATGATGAAGAAAATTAGTGAACTAAGCACCCTTTGTGGGGTTGATGCCTGTGCCATAGTGTACAATTCACGTCAAGACGCTCATCCTCTTGACGAGCCCGAGGTTTGGCCCTCCCGCATGGGAGTTGAAAGGGTGATTGAGAAATTCCGGCAAATGCCAGAAATTGATCAAAACAGGAAGAGGATGGATCATGCGGATTACTTGACTCTGAGGATCGCTAAAGAGAAGGAGAAACTGAAGAAGAAAAGGCATGACAACAACGAGAAGGAGTTCCAGCTTCGCATGCATGATTTCATGCTAAGAAACAGGCTTCCAGAGAATCTGAGCTTCTTTGATTTGAATAACTTGGCTTATCATACTGACATGAAGCTTAGGGAGATCGACATGCGGTTGCAGATGCTTCTGGAAAAAGAGAACAAGGAGATGATGATGGATTTCGCGTCGTCCAGTGGCGGAGCTTAG 543 0.453 MARSKVKLAYITNDAARRVTYKKRKRGMMKKISELSTLCGVDACAIVYNSRQDAHPLDEPEVWPSRMGVERVIEKFRQMPEIDQNRKRMDHADYLTLRIAKEKEKLKKKRHDNNEKEFQLRMHDFMLRNRLPENLSFFDLNNLAYHTDMKLREIDMRLQMLLEKENKEMMMDFASSSGGA* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1313 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Ahy17g1313 180 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 166 - -
Ahy17g1313 180 Gene3D - 13 119 IPR036879 GO:0003677|GO:0046983
Ahy17g1313 180 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy17g1313 180 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy17g1313 180 CDD MADS_SRF_like 2 90 IPR033897 GO:0000981|GO:0000987|GO:0045944
Ahy17g1313 180 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 166 - -
Ahy17g1313 180 SUPERFAMILY SRF-like 3 98 IPR036879 GO:0003677|GO:0046983
Ahy17g1313 180 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy17g1313 180 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy17g1313 180 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1313 Ahy-Chr17 21418735 21419710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1313 1 161 Type I MADS-box Gene Family AT5G48670 46.296 5.40e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy17g1313 SRF-TF 2.60E-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1313 - - ahf:112766956 347.821