Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1305 ATGGATAGACAATATGATTTGTTAGAGATGATTGCACCGCCAAAAGAGAGCTGGAAGATTCATGTCAGAGTAATCAGACTCTGGTCTTTACCAAAATTCAAAGACCCCAAGTCCAGTAGCTCTATTGAAATGGTATTGATGGATGAGCAGGGAACAACTATGCATGCTTCTGTAGGTGAGGATTTGATATCTGTGTTCGAGTCATTGATATCGGAAGGAACTGTGTATGTTTTTACATATTTTGGAGTTAACAACAACTGTGGGTTGTATCGCACAACATCGCATCAATTTCGGTTATTTTTTCAAGATAGAACTACTGTCTTACCCTCTTTCTGTGATGCAATACCGTTATATGGTATTAAGTTAGTTCCTTTTAGGGAAATTATGGGATACTCTCCTCATCATCCTTTTTTGGTTGACGTTGCTGGAGTTATGGCCGGCGTGGAGGGTGAGAGGAAATACATGAACGATGGTAAACTTATTAACATGATGGTCATTCATATTGAGAATGACGGTTTACGGCTTAATATTGTTGTTCTTGGAGAGATAGTGGACCGGATCAAGGATTTTCTAGCATCGGGCGATCAACAACTGCCAATAGTTATTTTTCAATTTGTAAGAGTAAAAAATGCTGGAGGTACCAATATTGTGCAGAACATTATGTATGGTACTAGACTCTTGATAAATCCAGATATTCCTGAGGCTTTGATGCTTCGAAAAAGAGAGATCTCGCAGTACCTGTCTGTGGTTTCTGGCAAATCAGCATATCTTGATGAAGATGAAGTTTTATATTCTATTGGGAGGAAGACAATAAAGGAGTTACGTGCTGCTGCGGATGTTGGATTCTATGTTGTTCGGGCCACTGTTCTTGATGTTGAACCCGTTCCAAGTTGGTGGTATAAATCATGTGTTTGCAGCGTGAAGGCAGAAGCTAATGCGGATGAATACTTCTGCGATGGCTGTAATAGGGACGTGAATAATGTGGTTGACAGGAAAAAGGGAAAGCAAGCAAAGATCCTACTGGTTTTAATGAGTTTTTCCTTGATAAGGAGTTTCTATTCAAGGTCGAAGTAG 1074 0.3976 MDRQYDLLEMIAPPKESWKIHVRVIRLWSLPKFKDPKSSSSIEMVLMDEQGTTMHASVGEDLISVFESLISEGTVYVFTYFGVNNNCGLYRTTSHQFRLFFQDRTTVLPSFCDAIPLYGIKLVPFREIMGYSPHHPFLVDVAGVMAGVEGERKYMNDGKLINMMVIHIENDGLRLNIVVLGEIVDRIKDFLASGDQQLPIVIFQFVRVKNAGGTNIVQNIMYGTRLLINPDIPEALMLRKREISQYLSVVSGKSAYLDEDEVLYSIGRKTIKELRAAADVGFYVVRATVLDVEPVPSWWYKSCVCSVKAEANADEYFCDGCNRDVNNVVDRKKGKQAKILLVLMSFSLIRSFYSRSK* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1305 357 Pfam Domain of unknown function DUF223 43 128 IPR003871 -
Ahy17g1305 357 Gene3D - 114 247 IPR012340 -
Ahy17g1305 357 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 333 - -
Ahy17g1305 357 Gene3D - 257 339 IPR012340 -
Ahy17g1305 357 CDD RPA1_DBD_A_like 19 107 - -
Ahy17g1305 357 PANTHER REPLICATION FACTOR A 1, RFA1 20 333 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy17g1305 357 SUPERFAMILY Nucleic acid-binding proteins 7 109 IPR012340 -
Ahy17g1305 357 SUPERFAMILY Nucleic acid-binding proteins 121 241 IPR012340 -
Ahy17g1305 357 Gene3D - 4 109 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1305 Ahy-Chr17 21002799 21009413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1305 1 323 Core DNA Replication Machinery Family AT5G08020 21.345 2.32e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1305 - - ahf:112765919 669.848