Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1302 ATGTCCGTACAGTCAACACTGAAGCTGGAGAAGTTGAACTTGAAGCTCTCGCCTTCAAGCTCTAATTTTGAGGGTGACCCACCAAGTAAGACTAGGCGCAAAACGAAACAGAGGTTGGTTCGGATCATCCTCACTGACCACGACGCTACCGATTCCGATTCTTCAAGCGACGAAGCACAACGAAACAACACACACAAACTCAAAAGAGAGATCACGCAAATAACCATGCACCTTCCCTCACCATATTCCTCTACTACTACTTCCCCTTCTCCTTCTTCTTCTTCTTCTTCAACTTCATCTTCTATCTTTGGTTCCGTCTCTTCTGATTCATTGCAACGGAGAACCAAATCATGCAAGAGACCCAAAAAACCGCAACTTCAACCGCCGGAGCGCCATCGCAACAGGTTCCGCGGTGTGAGGCAGCGGCCGTGGGGACGGTGGGCTGCCGAGATCCGTGACCCGACCCAAAGAAAACGGGTCTGGCTTGGAACCTTTGACACGGCGGAGGAGGCCGCCACCGAGTACGACCGTGCGGCGGTGAAGCTCAAGGGTCCAAACGCCGTTACGAACTTCCCGATTAACTCTTCGGCGGATATTACGGCGGTTGATAACGGTGTAGCGGCGTTTTCCGATGCTGCCGCGCTTTCTCCAACTTCTGTTTTGCCTTACGACGGTGACTCGACGCCGTTTGACGGTTTCCGTTACGTGGACGCTTTTGGCTTCGACATCGCCGATGAGGCGCCGTTAAGTTTGACGGACGTCGACGTTAACAGCGTTATGCTGACGTGTCAGCGTCTTGATGCAAAAGAGGATGAAGCGTTCGGCGAGTTTGACCTCGACGAGTTCATTACGTGGCCGTACTAA 864 0.5255 MSVQSTLKLEKLNLKLSPSSSNFEGDPPSKTRRKTKQRLVRIILTDHDATDSDSSSDEAQRNNTHKLKREITQITMHLPSPYSSTTTSPSPSSSSSSTSSSIFGSVSSDSLQRRTKSCKRPKKPQLQPPERHRNRFRGVRQRPWGRWAAEIRDPTQRKRVWLGTFDTAEEAATEYDRAAVKLKGPNAVTNFPINSSADITAVDNGVAAFSDAAALSPTSVLPYDGDSTPFDGFRYVDAFGFDIADEAPLSLTDVDVNSVMLTCQRLDAKEDEAFGEFDLDEFITWPY* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1302 287 SMART rav1_2 135 198 IPR001471 GO:0003700|GO:0006355
Ahy17g1302 287 MobiDBLite consensus disorder prediction 27 72 - -
Ahy17g1302 287 ProSiteProfiles AP2/ERF domain profile. 135 192 IPR001471 GO:0003700|GO:0006355
Ahy17g1302 287 CDD AP2 135 194 IPR001471 GO:0003700|GO:0006355
Ahy17g1302 287 Pfam AP2 domain 135 184 IPR001471 GO:0003700|GO:0006355
Ahy17g1302 287 MobiDBLite consensus disorder prediction 76 112 - -
Ahy17g1302 287 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 283 - -
Ahy17g1302 287 PRINTS Ethylene responsive element binding protein signature 158 174 IPR001471 GO:0003700|GO:0006355
Ahy17g1302 287 PRINTS Ethylene responsive element binding protein signature 136 147 IPR001471 GO:0003700|GO:0006355
Ahy17g1302 287 Gene3D AP2/ERF domain 134 194 IPR036955 GO:0003700|GO:0006355
Ahy17g1302 287 SUPERFAMILY DNA-binding domain 135 194 IPR016177 GO:0003677
Ahy17g1302 287 MobiDBLite consensus disorder prediction 1 26 - -
Ahy17g1302 287 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI6-LIKE 33 283 - -
Ahy17g1302 287 MobiDBLite consensus disorder prediction 1 140 - -
Ahy17g1302 287 PIRSF PTI6 9 287 IPR017392 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1302 Ahy-Chr17 20934138 20935869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1302 30 223 AP2-EREBP Transcription Factor Family AT4G27950 40.488 4.46e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy17g1302 AP2 1.10E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1302 K13434 - gmx:100817278 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1302 17 20934138 20935869 Ahy17g1302 17 20934138 20935869 ECH
Ahy17g1302 17 20934138 20935869 Ahy7g1069 7 16317189 16318918 hybridization
Ahy17g1302 17 20934138 20935869 Ahy17g1302 17 20934138 20935869 PCT
Ahy17g1302 17 20934138 20935869 Ahy7g1069 7 16317189 16318918 PCT
Ahy7g1069 7 16317189 16318918 Ahy17g1302 17 20934138 20935869 PCT