Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1248 ATGAAGCTTTCAACATCAGGGTTGCCTCAGCAGGGACAACATGAAGGAGGGGAGAAGAAATGCTTGAATTCTGAGCTATGGCATGCATGTGCGGGTCCATTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACTAACCGAGAAGTTGATGGCCACATACCAAATTACCCGAGCTTGCCGCCCCAATTGATTTGCCAACTTCACAATGTTACGATGCATGCAGATGTTGAAACAGATGAAGTTTATGCCCAAATGACACTGCAGCCGTTGACTCCGCAAGAGCAGAAGGATACCTTTCTTCCCATGGAATTGGGAGTTCCAAGTAAGCAGCCCTCGAATTATTTTTGCAAGACCTTAACGGCTAGTGACACCAGCACACATGGAGGGTTTTCCGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCGCTGGATTTCTCACAGCAACCGCCTGCTCAAGAATTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAATTTCGTCATATTTTTAGAGGGCAGCCAAAGAGGCACCTTCTTACTACTGGCTGGAGTGTATTTGTTAGTGCCAAAAGACTTGTGGCAGGAGATTCTGTGCTTTTCATATGGAACGAAAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCAATAGACCACAAACTGTAATGCCTTCGTCAGTTCTATCCAGTGACAGTATGCATATTGGCCTTCTGGCAGCTGCTGCCCATGCTGCAGCAACTAATAGTTGTTTCACAGTGTTCTATAATCCAAGGGCTAGTCCATCCGAGTTTGTCATACCACTTTCAAAGTATATCAAAGCTGTATACCATACCCGTGTTTCTGTTGGTATGCGTTTCAGGATGCTTTTCGAGACTGAAGAATCAAGTGTCCGGAGGTACATGGGTACAATAACTGGAATAAGTGACTTGGATCCAGTTCGATGGCCAAATTCTCATTGGCGATCTGTAAAGGTTGGTTGGGATGAATCCACAGCAGGAGATAGGCAGCCACGAGTATCATTATGGGAAATTGAGCCTTTAACAACATTCCCAATGTATCCATCACTATTCCCACTCAGATTGAAACGTCCATGGCATCCCGGCACCTCATCTTTTCTTGATGGCAGAGATGATGCAACTAATGGGCTAATGTGGCTGAGAGGTGGAGCTGGCGACCAAGGTCTGAATTCCCTCAATTTTCAAACTGTCGGCATGCTGCCATGGATGCAGCAGAGGCTTGATCCGGCTTTGCTTGGAAATGATCACAATCAGCAATACCAAGCAATGTTGGCAGCTGGTTTGCAAAACATGGGGAGTGGAGAACTCTTGAGGCAACAAATGATGAATTTCCAACAGCCTTTCAATTATCTCCAGCAACCAGGAAATGTCAACACTCCTATCCAGCTTCAGCAGCAGCAAACAATTCAGCAATCAGTGACTTCTAATATCTTGCAGCAACAAGCCCCGGTATTGACAGAGAACTTGTCTCAGCAGCTCTTTCAGAAATCGAACAACCGAGAAGACCATGCGCAGCAGCAGCATCAGCATCAGCAGCACACTTATCAGGATGCACTTTTAGTTCAAGGTGACCAGCTCCACCAAAGGCAACACTCTAGCTTGCCTTCACCATCGTACTCGAAACCTGAGTTTGTAGATGGCAGCATGAAGTTTGAAGGATCAGGTTCGCCAGGACAGAACATGCTTGGTTCACTTTGCCCTGAAGGGAGCAGCAATCTCTTGAATCTATCTAGAGGTGGTCAGTCTATACCAACCGAACAGTTGCCCCAACAATCATGGCCCCCAAAGTATACACCTCTTCAGGTCAATGCTTTCAGCAACTCAATGTCACACGTGCAATATTCTGGAAAAGATATTGCAGTGGCATCACCACATCGTAATTCAGATGCTCAGAACCCGACTCTCTTTGGAGTCAATATCGATTCATCTGGTCTTCTACTCCCCACCACTGTTCCCCATTACACAACTTCATCTGCTGATACCGATGCTTCAACAATGCCGTTAGGGGATTCTGGATTCCAGGGCCCTCTATATGGTTGCATGCAAGATTCATCCGAGTTAATGCAAAGTGCGGGACAAGTTGACCCCCAAAACCAGACACCAACATTTGTCAAGGTTTATAAATCAGGGTCAGTTGGGCGCTCACTTGACATCTCCCGGTTCAGCAGCTATCATGAACTGAGAGAAGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAATGATATTCTTCTCCTTGGGGACGATCCATGGGAATCATTTGTCAACAATGTTTGGTATATCAAAATACTTTCACCTGAGGATATTCAGAAGATGGGAGAACAAGCCGTAGAGTCTCGTGACGGTGTTCCTGGCCTACCATCGATAGGCGAATACTGA 2490 0.4655 MKLSTSGLPQQGQHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGVPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFLDGRDDATNGLMWLRGGAGDQGLNSLNFQTVGMLPWMQQRLDPALLGNDHNQQYQAMLAAGLQNMGSGELLRQQMMNFQQPFNYLQQPGNVNTPIQLQQQQTIQQSVTSNILQQQAPVLTENLSQQLFQKSNNREDHAQQQHQHQQHTYQDALLVQGDQLHQRQHSSLPSPSYSKPEFVDGSMKFEGSGSPGQNMLGSLCPEGSSNLLNLSRGGQSIPTEQLPQQSWPPKYTPLQVNAFSNSMSHVQYSGKDIAVASPHRNSDAQNPTLFGVNIDSSGLLLPTTVPHYTTSSADTDASTMPLGDSGFQGPLYGCMQDSSELMQSAGQVDPQNQTPTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDILLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESRDGVPGLPSIGEY* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1248 829 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 817 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy17g1248 829 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Ahy17g1248 829 CDD B3_DNA 128 229 IPR003340 GO:0003677
Ahy17g1248 829 Gene3D - 293 365 - -
Ahy17g1248 829 ProSiteProfiles PB1 domain profile. 721 805 IPR000270 GO:0005515
Ahy17g1248 829 SMART B3_2 129 231 IPR003340 GO:0003677
Ahy17g1248 829 Gene3D - 717 810 - -
Ahy17g1248 829 SUPERFAMILY DNA-binding pseudobarrel domain 113 258 IPR015300 -
Ahy17g1248 829 Pfam Auxin response factor 255 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ahy17g1248 829 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Ahy17g1248 829 Gene3D - 127 230 IPR015300 -
Ahy17g1248 829 PANTHER AUXIN RESPONSE FACTOR 1 817 - -
Ahy17g1248 829 Pfam AUX/IAA family 716 805 IPR033389 -
Ahy17g1248 829 SUPERFAMILY CAD & PB1 domains 719 795 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1248 Ahy-Chr17 18935608 18943665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1248 99 825 B3 DNA Binding Superfamily AT5G37020 68.529 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ahy17g1248 AUX_IAA 3.90E-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1248 - - adu:107458034 1665.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1248 17 18935608 18943665 Ahy7g1018 7 15068105 15076081 hybridization
Ahy17g1248 17 18935608 18943665 Ahy17g1248 17 18935608 18943665 PCT
Ahy17g1248 17 18935608 18943665 Ahy7g1018 7 15068105 15076081 PCT
Ahy7g1018 7 15068105 15076081 Ahy17g1248 17 18935608 18943665 PCT