Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1217 ATGTTACTCACCACACTCTCCACACTCGCACTAACCATTACTACTCTCTTCACACTCTCTCCACTTGCCACGTCACACTACTCTTCTTCCCAACAACCACCTTCCTCTCCCTCTTCTTCAACTTCCCTCTCCGAGTGGCGATCCGCGCATGCCACCTACTACGCCGCCGCCGACCCTCGCGACGCTGTTGGCGGCGCGTGCGGCTACGGCGACCTCGTGAAAGCCGGCTACGGCATGGCAACCGTCGGTCTCAGCGAGGCACTCTTTGAACGCGGCCAGATCTGCGGTGCGTGCTTCGAGGTGAAGTGTGTGGATGATCTCAAGTGGTGTATACCTGGAACTTCCATTATTGTAACCGCCACGAACTTCTGCGCGCCCAATTATGGGTTTGATAATGAAGGCGGTGGACACTGTAACCCTCCAAATAAGCATTTTGTGCTTCCGATTGAGGCCTTTGAGAAGATCGCTATTTGGAAGGCTGGCAACATGCCGGTCCAGTATAGAAGGATACAATGCAGAAGGGAAGGAGGAATCCGGTTTACAGTAACTGGCTCTGGTATCTTCCTTTCAGTGCTTATCAGCAATGTTGCTGGTCATGGAGACATAGTCGCCGTGAAGGTTAAGGGCTCCAGAACAGGTTGGCTCCCAATGGGTCGGAATTGGGGCCAGAACTGGCACATAAATGCGTTACTACAAAACCAACCTCTTTCCTTTGAGGTTACCGGTAGCGATGGAAAAACAGTTATATCCTACAATGTTGCCCCCAAGGATTGGAGCTTTGGACAAACCTTTGAAGGCAAGCAATTTGAGCCCTAA 816 0.5184 MLLTTLSTLALTITTLFTLSPLATSHYSSSQQPPSSPSSSTSLSEWRSAHATYYAAADPRDAVGGACGYGDLVKAGYGMATVGLSEALFERGQICGACFEVKCVDDLKWCIPGTSIIVTATNFCAPNYGFDNEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRIQCRREGGIRFTVTGSGIFLSVLISNVAGHGDIVAVKVKGSRTGWLPMGRNWGQNWHINALLQNQPLSFEVTGSDGKTVISYNVAPKDWSFGQTFEGKQFEP* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1217 271 PRINTS Expansin signature 103 114 IPR002963 GO:0009664
Ahy17g1217 271 PRINTS Expansin signature 252 268 IPR002963 GO:0009664
Ahy17g1217 271 PRINTS Expansin signature 76 90 IPR002963 GO:0009664
Ahy17g1217 271 PRINTS Expansin signature 176 188 IPR002963 GO:0009664
Ahy17g1217 271 PRINTS Expansin signature 223 244 IPR002963 GO:0009664
Ahy17g1217 271 PRINTS Expansin signature 116 126 IPR002963 GO:0009664
Ahy17g1217 271 PRINTS Expansin signature 152 165 IPR002963 GO:0009664
Ahy17g1217 271 PRINTS Expansin signature 135 152 IPR002963 GO:0009664
Ahy17g1217 271 PRINTS Expansin signature 188 209 IPR002963 GO:0009664
Ahy17g1217 271 Gene3D - 29 173 IPR036908 -
Ahy17g1217 271 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 64 177 IPR007112 -
Ahy17g1217 271 SUPERFAMILY Barwin-like endoglucanases 41 195 IPR036908 -
Ahy17g1217 271 PANTHER EXPANSIN-A13 25 270 - -
Ahy17g1217 271 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Ahy17g1217 271 PRINTS Expansin/Lol pI family signature 214 228 IPR007118 GO:0005576
Ahy17g1217 271 PRINTS Expansin/Lol pI family signature 85 103 IPR007118 GO:0005576
Ahy17g1217 271 PRINTS Expansin/Lol pI family signature 160 176 IPR007118 GO:0005576
Ahy17g1217 271 PRINTS Expansin/Lol pI family signature 252 266 IPR007118 GO:0005576
Ahy17g1217 271 PRINTS Expansin/Lol pI family signature 45 60 IPR007118 GO:0005576
Ahy17g1217 271 Pfam Lytic transglycolase 82 167 IPR009009 -
Ahy17g1217 271 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 187 266 IPR007117 -
Ahy17g1217 271 SMART dpbb_1 81 167 IPR007112 -
Ahy17g1217 271 SUPERFAMILY PHL pollen allergen 174 266 IPR036749 -
Ahy17g1217 271 Pfam Expansin C-terminal domain 178 255 IPR007117 -
Ahy17g1217 271 Gene3D - 177 269 IPR036749 -
Ahy17g1217 271 PANTHER EXPANSIN-A15 25 270 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1217 Ahy-Chr17 18100336 18102564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1217 23 270 Expansin Gene Family AT3G03220 82.258 7.71e-151 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1217 - - gmx:100784516 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1217 17 18100336 18102564 Ahy7g0988 7 14410452 14412666 hybridization