Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1127 ATGGCTTCTTCCTTGGATATGTCACTTGATGATAGGATAAAGAGCAGCAGGAGTAACAGAGAAAGAGGTAGAGGACGTGGCAGAGCCCGAGCTCACACTAGCCGTGGGACAGTCAGGAATCCTGGTGTTGGTGGAAGAATAACTGGTGCTGCTCGTAGAGGTCTTAATACCCGGCCGTCATCCTATGCCATTGCCAAGTCCATCCGGAGGACCGGGCCTTTTCCTTGGCAGCAAGATTTGTTTGAGGATAGCTTAAGAGCTGCAGGGATACAAGGAGTTGAAGTTGGTACGAAGTTGTACGTTTCAAATTTGGACCATGGAGTAACCAATGAAGACATAAGGGAGCTTTTTTCTGAGATTGGAGACTTGAAGCGCTGTGTTGTTCATTATGATAAAACTGGACATCCAAGTGGTTCTGCCGAAGTTGTCTATACAAGAAGAAGTGATGCATTTGCCGCTCTTAAACGATACAATAATGTGCTTCTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTGCCAATGCAGAATTGCCTATAACTGCTCGTGTAAATGTATCGGGGGTAAATGGGCGAAGGAAGAAAAGGACAGTTGTGATGATGTCTCGTGGAGGTCAAACTGGAGGTGGTGCTGGGCTCAGTCGCGCTGCCACTCGGGTACAACGTAGTGGGGCAAGGCCAAAGGGTGGAACTTCAAGTGGCCGAGGCCGTGCTCGCGGCCGTGGACGTGGCAGGGTTGGACGCCAAGGGCGTGGGAAAAAGGAGAAGTCAGCTGAGGAACTTGACAAGGAGCTGGAAACCTACCATGCTGAGGCTATGAACATCTCGTAG 831 0.497 MASSLDMSLDDRIKSSRSNRERGRGRGRARAHTSRGTVRNPGVGGRITGAARRGLNTRPSSYAIAKSIRRTGPFPWQQDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSEIGDLKRCVVHYDKTGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGANAELPITARVNVSGVNGRRKKRTVVMMSRGGQTGGGAGLSRAATRVQRSGARPKGGTSSGRGRARGRGRGRVGRQGRGKKEKSAEELDKELETYHAEAMNIS* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1127 276 MobiDBLite consensus disorder prediction 1 52 - -
Ahy17g1127 276 CDD RRM_THOC4 97 171 - -
Ahy17g1127 276 SUPERFAMILY RNA-binding domain, RBD 96 193 IPR035979 GO:0003676
Ahy17g1127 276 SMART rrm1_1 98 170 IPR000504 GO:0003723
Ahy17g1127 276 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 275 - -
Ahy17g1127 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 167 IPR000504 GO:0003723
Ahy17g1127 276 Coils Coil 251 276 - -
Ahy17g1127 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 174 IPR000504 GO:0003723
Ahy17g1127 276 Gene3D - 92 173 IPR012677 -
Ahy17g1127 276 PANTHER THO COMPLEX SUBUNIT 4C 1 275 - -
Ahy17g1127 276 SMART FoP_duplication_2 203 276 IPR025715 -
Ahy17g1127 276 MobiDBLite consensus disorder prediction 202 276 - -
Ahy17g1127 276 MobiDBLite consensus disorder prediction 251 269 - -
Ahy17g1127 276 Pfam C-terminal duplication domain of Friend of PRMT1 215 270 IPR025715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1127 Ahy-Chr17 15610843 15615567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1127 96 171 Eukaryotic Initiation Factors Gene Family AT2G23350 39.474 4.51e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1127 K12881 - gmx:100820344 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1127 17 15610843 15615567 Ahy17g1127 17 15610843 15615567 ECH