Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1081 ATGGAGAATGGTGGTGAAATGATCAAAAAAACTAAAGGGAGACAAAAGATAGAGATAAAGAGGATTGAGAATAAAAAAAATTGTCAAATCTCTTTTACAAAGAGAAAAGATGGCTTACTGAAGAAAGCAAATGAATTAAAATCTTTATGTGATGCTGGTGTTGATTTGATCATATATTCTTCCAATGGAAAAGCCTATTATTATGGCGATTCTTCGTTAAAGACAATGAAAATGGCTCTCTCAAACGAACAACAACCTCAAGGTAGTAATCAGTTTCTTGGTTACATCATAGAGGGAATGTCTAGGATGGACATGCAAAATCTTATTAAAAAGAACGATTCACTTGTGGATCGATTAAATGTTGAGAAAGAACGAGCCGACACTCTTTCTAGAATTTTAAAAACAATTAAAAATGACAACAACATCACCAATTGGTGGGATACGATTGGTCAAAGTTGTGAAAAAAATAGAGAGATGGAAGAAATTCTTGTAGTTCTTCAGCAAACTTTGAAAAATCAAATTTCACTTAAGATGGTTGCAAATCAGGCTGCAGTTACGACTATAGCTGAGAGTGTGACATCTACATTTTATCATGGTGATCAAACCATGGATCAAGTTAATCCCGGAGTTATTGAATCATACCCTACTCATGGAAGTATGAGTACTTTTTCCAGCATAGCTTTTGCTACTGGTGTCAACCCTTTTGACGCTGCAAGAGAATTTGGTGACCAAAATGCTCCTGTTTGGTATCCATCATACCAACATCAACAAGGATATAATAGTCTATTTCTCTACGATGTAAGTAATAGGAATGGTATTGGGAGAAGCAGCGGCGGCGGCGATGACACTGGAAATCATCTTTACCATTCAAATTCTAACCATAACAATGGTGGAGGCTTTTTTGGTTTTCCATACCAAAATAATCCATTCAACAATGGTTATGGCCGCGGAGGATTCTTCTAA 963 0.3603 MENGGEMIKKTKGRQKIEIKRIENKKNCQISFTKRKDGLLKKANELKSLCDAGVDLIIYSSNGKAYYYGDSSLKTMKMALSNEQQPQGSNQFLGYIIEGMSRMDMQNLIKKNDSLVDRLNVEKERADTLSRILKTIKNDNNITNWWDTIGQSCEKNREMEEILVVLQQTLKNQISLKMVANQAAVTTIAESVTSTFYHGDQTMDQVNPGVIESYPTHGSMSTFSSIAFATGVNPFDAAREFGDQNAPVWYPSYQHQQGYNSLFLYDVSNRNGIGRSSGGGDDTGNHLYHSNSNHNNGGGFFGFPYQNNPFNNGYGRGGFF* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1081 320 Gene3D - 24 91 IPR036879 GO:0003677|GO:0046983
Ahy17g1081 320 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Ahy17g1081 320 SUPERFAMILY SRF-like 13 78 IPR036879 GO:0003677|GO:0046983
Ahy17g1081 320 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
Ahy17g1081 320 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Ahy17g1081 320 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Ahy17g1081 320 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Ahy17g1081 320 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Ahy17g1081 320 Coils Coil 105 125 - -
Ahy17g1081 320 PANTHER SERUM RESPONSE FACTOR HOMOLOG 13 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1081 Ahy-Chr17 14601852 14603411 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1081 9 146 Type I MADS-box Gene Family AT3G04100 33.333 3.42e-19 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy17g1081 SRF-TF 6.70E-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1081 - - ahf:112762769 492.656