Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1078 ATGGCCACCAAAATCATCAGCATTGCAACACTACTCTTACTAGCTCTCTTCACAACAACACAAGCCAGAATCCCCGGTGTCTACACTGGCTCCGCATGGGAGACTGCTCACGCCACATTCTACGGTGGCAGCGACGCCTCCGGAACAATGGGAGGGGCATGTGGTTATGGAAACTTGTACAGCCAAGGGTACGGTGTGAACACGGCGGCGTTGAGCACTGCACTGTTCAACAATGGCTTCAGCTGCGGAGCGTGTTTCGAGATCAAATGCGCCAACGACCCCAACTGGTGCCATGCGGGTTCGCCATCGATATTCGTGACGGCAACTAACTTCTGCCCTCCCAACTACGCTCTCCCAAGTGACAATGGGGGTTGGTGCAACCCTCCAAGGCCACACTTCGATCTCGCCATGCCCGTGTTCCTCAAGATCGCTCAGTACCGCGCTGGTATTGTTCCCGTCTCTTACCGCAGGGTTCCATGCCGCAAGCAAGGTGGGATGAGATTCACGATCAACGGTTTCCGTTACTTCAACTTGGTTTTGATCACGAACGTGGCAGGTGCAGGGGATATCATGAGGGCGAGTGTGAAGGGTTCCAATACAGGGTGGATGACCATGAGCCGTAACTGGGGTCAAAACTGGCAATCAAACTCTGTTTTGGTTGGTCAGTCACTCTCCTTCAGGGTCACAGCCAGTGACCGTCGCACTTCCACTTCTTGGAACATTGCACCCTCTAATTGGCAATTTGGCCAAACCTTCACCGGCAAAAACTTTAGGGTCTAG 780 0.5346 MATKIISIATLLLLALFTTTQARIPGVYTGSAWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCANDPNWCHAGSPSIFVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPVFLKIAQYRAGIVPVSYRRVPCRKQGGMRFTINGFRYFNLVLITNVAGAGDIMRASVKGSNTGWMTMSRNWGQNWQSNSVLVGQSLSFRVTASDRRTSTSWNIAPSNWQFGQTFTGKNFRV* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1078 259 PANTHER EXPANSIN-A15 8 258 IPR002963 GO:0009664
Ahy17g1078 259 Gene3D - 166 257 IPR036749 -
Ahy17g1078 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Ahy17g1078 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Ahy17g1078 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Ahy17g1078 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Ahy17g1078 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Ahy17g1078 259 SMART dpbb_1 68 155 IPR007112 -
Ahy17g1078 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Ahy17g1078 259 PANTHER EXPANSIN-A4 8 258 - -
Ahy17g1078 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Ahy17g1078 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Ahy17g1078 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Ahy17g1078 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Ahy17g1078 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Ahy17g1078 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Ahy17g1078 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Ahy17g1078 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Ahy17g1078 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Ahy17g1078 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Ahy17g1078 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Ahy17g1078 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Ahy17g1078 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Ahy17g1078 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Ahy17g1078 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Ahy17g1078 259 Gene3D - 19 161 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1078 Ahy-Chr17 14495784 14498051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1078 1 259 Expansin Gene Family AT2G39700 83.398 1.22e-165 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1078 - - gmx:100809018 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g1631 14 87712199 87715383 Ahy17g1078 17 14495784 14498051 ECH
Ahy12g1782 12 96078704 96081830 Ahy17g1078 17 14495784 14498051 ECH
Ahy18g0390 18 3333336 3335566 Ahy17g1078 17 14495784 14498051 ECH
Ahy13g0462 13 4766751 4769163 Ahy17g1078 17 14495784 14498051 ECH
Ahy17g1078 17 14495784 14498051 Ahy17g1078 17 14495784 14498051 ECH
Ahy17g1078 17 14495784 14498051 Ahy7g0888 7 11983979 11986331 hybridization