Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1023 ATGGCTCCTCCTTCAGATATCAATCACTTTTCTCATCCATGTATATATGGGGATTATAGTTCTTCACGCTCAGAGAGAAGGCCTAGTTTCATGAAATGGTTAAGTAAGCTTTTCAAAGGAGGGTCCAATAGAGGAAGAGGTGGCCGTCGCCTGCAAGAACCGGACGAGGAAAACATCGCTTGGCGCGCACCCCCTAGACCATTTGATGATGGTTCTAGAGCTCATAACAGGGAGAATGATGATCTCGGCCATGCGATGTCACGATCTTCAGCAGAAGATTTAAAGCGACCAAATGCACATGAAGGATATAACTGGGGGACAGACAATGATGATTATGGAAAAGCACTTCAAGATAGTTTGAACTCATCTGCATACCCTCCATATAATGCTGCTCCATATTACCCCAGAGATTATAGAAAAATATGTGGAGGGTGTAACCAAGAGATACTCTATGGAAATTGTTTGGGATGCTTGGATACTTATTTTCATCCAGATTGCTTTCGTTGTCACGCTTGTCAGTATCCCATTACCGAGCGCGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAGTCCTGTTTTAAAGAGTTGACTCACCCAAAATGTGAAGTTTGCTTCCAATTTATTCCTATAAATGCTGCTGGATTGATTGAGTATAGGTGCCACCCTTTTTGGTCCCAAAAATACTGTCCATCTCATGAATATGATTATACATCTCGCTGCTGCAGTTGCGAAAGATTGGAGCCTCGGAATGTAAAATACTATAGACTTGAAGATGGAAGAAGTTTGTGCATGGAGTGCATGGAATCTGCGATAATAGACACTGGTGATTGCCAGCCTCTTTATCATTCTATCAGAGATTACTATGAAGGGATGAATATGAAAATAGGTCAACAAATTCCCATGCTTCTTGTGGCCAGAGAAGCACTCAATGAAGCTATTGTTGGGGAGAAAAATGCTGTTCATCACATGCCAGAAACAAGGGGCATATGCCTTTCAGAAGAGCAGACTATCACCAGTATACATAGAAAGCCAAGACATGGAGGCCATCGACGAATGACGAGAACTCAAAATCAAATGCTGGTTAGAAGATGTGAAGTTACAGCAATTCTTGTCCTATATGGTCTTCCAAGGCTACTCACAGGTGCCATCCTTGCACATGAGTTGATGCATGCATGGTTAAGACTTAAAGGTTACCGCAACCTTAATCCTGAAGTAGAGGAAGGTATATGTCAGGTTCTCTCATACATGTGGCTTGAGTCAGAAGTAATGCCATCAACATCTGCAGCAGCAGCATCATCATCTTATCCTTCTTCATCCTCCTCTTCCTCAAAGAAAGGAGCAAAGTCTCATGTTGAAAACAAGTTGGGAGAGTTTTTCTTGAATCAGATTGCAAATGATTCTTCCCCTGCTTATGGTGGTGGCTTTAGAGCTGCAAATGAAGCTGTTAATAAATATGGTTTACGTGCCATTCTTGACCATATTCGTTACACTGGTCTTCTACCAGAGTAG 1512 0.4213 MAPPSDINHFSHPCIYGDYSSSRSERRPSFMKWLSKLFKGGSNRGRGGRRLQEPDEENIAWRAPPRPFDDGSRAHNRENDDLGHAMSRSSAEDLKRPNAHEGYNWGTDNDDYGKALQDSLNSSAYPPYNAAPYYPRDYRKICGGCNQEILYGNCLGCLDTYFHPDCFRCHACQYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDYTSRCCSCERLEPRNVKYYRLEDGRSLCMECMESAIIDTGDCQPLYHSIRDYYEGMNMKIGQQIPMLLVAREALNEAIVGEKNAVHHMPETRGICLSEEQTITSIHRKPRHGGHRRMTRTQNQMLVRRCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPSTSAAAASSSYPSSSSSSSKKGAKSHVENKLGEFFLNQIANDSSPAYGGGFRAANEAVNKYGLRAILDHIRYTGLLPE* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1023 503 MobiDBLite consensus disorder prediction 1 25 - -
Ahy17g1023 503 SMART lim_4 141 193 IPR001781 -
Ahy17g1023 503 ProSiteProfiles LIM domain profile. 140 200 IPR001781 -
Ahy17g1023 503 Gene3D Cysteine Rich Protein 128 199 - -
Ahy17g1023 503 CDD LIM_DA1 142 194 - -
Ahy17g1023 503 Pfam Protein DA1 291 497 IPR022087 -
Ahy17g1023 503 Pfam LIM domain 142 195 IPR001781 -
Ahy17g1023 503 ProSitePatterns LIM zinc-binding domain signature. 142 176 IPR001781 -
Ahy17g1023 503 MobiDBLite consensus disorder prediction 46 99 - -
Ahy17g1023 503 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 20 502 - -
Ahy17g1023 503 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 138 167 - -
Ahy17g1023 503 PANTHER PROTEIN DA1-RELATED 2 20 502 IPR045218 -
Ahy17g1023 503 MobiDBLite consensus disorder prediction 38 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1023 Ahy-Chr17 13147921 13154148 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ahy17g1023 DA1-like 7.90E-96 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1023 - - aip:107608934 1023.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1023 17 13147921 13154148 Ahy17g1023 17 13147921 13154148 ECH
Ahy17g1023 17 13147921 13154148 Ahy7g0846 7 10860923 10866685 hybridization