Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1007 ATGTCAATGTTGGTTACTGAGGACAACAACAACAACAATAATAAGCCTCATGTTGTTGTTGACGTAGACAATAATGTCTCTCAAGGTAGTACTAGTAGCTGTGTCGGCAATGAAGGTTGTGCTTCTTCTGAGACAAGTGAGGAACAACAACAAAGTAATTCCCATGATTCTGGTTCCGAGATTGTTGCTGGAGCAATTGAGAAAGAGAGAGGGTCTTCAGTTTCATCAGATCAGTGTTCTGTGGAGCTTGTGGATCTGGAGAGTGATGTGGATAAGGTACGGCACTTAGATCATGATAACAATAATAATAATAATAAGGTGGAGAGGGATTGCAGGATTTGTCACCTAAGCATGGATATGACCAACCATGAATCTGGTGGGTCCCCCATTGAACTTGGTTGTTCTTGTAAGGATGATTTGGCTGCTGCACATAAACAATGTGCTGAGGCTTGGTTCAAGATCAAAGGCAACAAAACTTGTGAAATTTGTGGATCAATTGCACACAATGTAGCCGGCACAATCGAAGTTCAAATGACAGAACAGTGGAATGACTCCAATGATGCTTCCATTGCTCCACCAACCGGGCCTGCACCCCCGGCCAGCGAAACTCGAAACTTCTGGCAGGGACATCGTTTTTTGAATTTCCTACTAGCTTGTATGGTCTTTGCATTTGTCATATCCTGGCTTTTTCACTTCAATGTGCCCTCATGA 711 0.4318 MSMLVTEDNNNNNNKPHVVVDVDNNVSQGSTSSCVGNEGCASSETSEEQQQSNSHDSGSEIVAGAIEKERGSSVSSDQCSVELVDLESDVDKVRHLDHDNNNNNNKVERDCRICHLSMDMTNHESGGSPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIAHNVAGTIEVQMTEQWNDSNDASIAPPTGPAPPASETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1007 236 Pfam RING-variant domain 111 163 IPR011016 GO:0008270
Ahy17g1007 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 172 IPR013083 -
Ahy17g1007 236 CDD RING_CH-C4HC3_MARCH 111 164 - -
Ahy17g1007 236 SUPERFAMILY RING/U-box 106 166 - -
Ahy17g1007 236 ProSiteProfiles Zinc finger RING-CH-type profile. 103 170 IPR011016 GO:0008270
Ahy17g1007 236 SMART ringv_2 110 164 IPR011016 GO:0008270
Ahy17g1007 236 MobiDBLite consensus disorder prediction 24 58 - -
Ahy17g1007 236 PANTHER ZINC FINGER, RING-CH-TYPE 20 236 - -
Ahy17g1007 236 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 20 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1007 Ahy-Chr17 12743690 12747116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1007 15 236 C3H Transcription Factor Family AT5G05830 52.915 5.75e-66 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1007 - - adu:107457785 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g1649 14 90142948 90146590 Ahy17g1007 17 12743690 12747116 ECH
Ahy12g1884 12 99978108 99983221 Ahy17g1007 17 12743690 12747116 ECH
Ahy17g1007 17 12743690 12747116 Ahy17g1007 17 12743690 12747116 ECH
Ahy17g1007 17 12743690 12747116 Ahy7g0830 7 10614344 10617831 hybridization