Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0978 ATGGATGTGATAAAGACGCAGCAAATATCGTGGAGGGCGATAGAGAAAGTTGTGGTGCACCCACTTGTGCTCCTCAGCATAGTCGACAACTACAACAGAGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGCGTCCTCCTCGGCTCTTCCTTCAAAGGCACCGTCGACGTCACCAACAGCTATGCCGTTCCCTTTGAAGAAGATGACAAGGATCCTTCCATATGGTTTCTCGACCATAACTATCACGAGTCCATGTTCTCCATGTTTAAGAGAATTAACGCAAAGGAGCATGTTGTTGGGTGGTACAGCTCCGGCCCCAAGCTCCGAGAGAATGATCTTGACATTCATGCTTTGTTCAATGACTATGTTCCCAATCCTGTTTTGGTTATAATTGATGTTGAGCCTAAGGAACTGGGAATTCCTACCAAAGCTTACTATGCAGTTGAAGAGGTTAAAGAGAATGCCACTCAGAAAAGCCAAAAGGTCTTTGTGCATGTGCCATCAGAAATCGCTGCTCATGAAGTTGAGGAAATAGGGGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGCTACAGAGGTAAGTGGAAAACTTACAGCCTTGAAAGGTTTGGATGCAAGACTTAAAGAGATAAGAAGTTATCTTGACCTTGTCATCGATGGAAAGCTTCCTTTAAACCATGAGATTTTGTACCATCTGCAGGATGTGTTCAACCTGCTACCAAACCTTAATGTCAACGATCTGATAAAGGCTTTTGCAGTGAAAACAAATGATATGATGCTGGTAATATACCTGTCGTCCCTTATCAGAAGTGTAATTGCGCTCCACAACTTGATTAACAATAAGATGCTCAACAAAGAACATGAACGCGCAGAAGACTCGAAGTCAGTACCAGTATCAAGTACAGCTGGAAGTTAA 933 0.4427 MDVIKTQQISWRAIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSSGPKLRENDLDIHALFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSGKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVNDLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSKSVPVSSTAGS* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0978 310 Gene3D Cytidine Deaminase, domain 2 10 194 - -
Ahy17g0978 310 CDD MPN_RPN7_8 15 295 IPR033858 GO:0005838
Ahy17g0978 310 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 7 1 310 - -
Ahy17g0978 310 ProSiteProfiles MPN domain profile. 17 154 IPR037518 -
Ahy17g0978 310 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 1 310 - -
Ahy17g0978 310 Pfam Maintenance of mitochondrial structure and function 174 285 IPR024969 -
Ahy17g0978 310 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 13 124 IPR000555 GO:0005515|GO:0008233|GO:0008237
Ahy17g0978 310 SMART pad1_6 16 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0978 Ahy-Chr17 12205364 12208538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0978 19 248 Eukaryotic Initiation Factors Gene Family AT2G39990 29.060 2.68e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0978 K03038 - gmx:100790393 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0978 17 12205364 12208538 Ahy20g1459 20 39585934 39590053 ECH
Ahy17g0978 17 12205364 12208538 Ahy17g0978 17 12205364 12208538 ECH